PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0817s0120.3.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 138aa MW: 15796 Da PI: 10.1061

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0817s0120.3.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.5	5.4e-19	45	99	3	57
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 k++++++eql+ Le F +++++ e++ +LA+ gL+ rqV vWFqNrRa++k+ SapurV1A.0817s0120.3.p 45 KKRQLSAEQLNFLEMNFGNDHKLESERKDKLAADSGLDPRQVAVWFQNRRARWKN 99 456899***********************************************95 PP
2	HD-ZIP_I/II	110.9	8.7e-36	45	128	2	85
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeve 85 kkr+ls+eq+++LE++F +++kLe+erK +la + gl+prqvavWFqnrRAR+k+k+lE++y++Lk+a+++++ e+++Le+ev+ SapurV1A.0817s0120.3.p 45 KKRQLSAEQLNFLEMNFGNDHKLESERKDKLAADSGLDPRQVAVWFQNRRARWKNKKLEEEYTKLKTAHESIVVEKCQLESEVN 128 9*******************************************************************************9975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	15.888	40	100	IPR001356	Homeobox domain
SMART	SM00389	1.5E-18	43	104	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.33E-17	44	107	IPR009057	Homeodomain-like
Pfam	PF00046	2.5E-16	45	99	IPR001356	Homeobox domain
CDD	cd00086	4.28E-14	45	101	No hit	No description
Gene3D	G3DSA:1.10.10.60	1.7E-20	47	107	IPR009057	Homeodomain-like
PRINTS	PR00031	8.3E-5	71	80	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	75	98	IPR017970	Homeobox, conserved site
PRINTS	PR00031	8.3E-5	80	96	IPR000047	Helix-turn-helix motif

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0009733	Biological Process	response to auxin
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 138 aa Download sequence Send to blast
MDHKVGDLIS QLYPAVYTQM VPKQGESKPR RRRRKNTGDG SGGAKKRQLS AEQLNFLEMN 60 FGNDHKLESE RKDKLAADSG LDPRQVAVWF QNRRARWKNK KLEEEYTKLK TAHESIVVEK 120 CQLESEVNLS LAFSVCF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00473	DAP	Transfer from AT4G36740	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0817s0120.3.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269\|PubMed:16055682}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006383237.1	5e-76	homeobox-leucine zipper protein ATHB-40
Swissprot	O23208	1e-52	ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBL	B9MXR7	1e-74	B9MXR7_POPTR; Uncharacterized protein
STRING	POPTR_0005s12760.1	2e-75	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36740.1	6e-45	homeobox protein 40

Link Out ? help Back to Top
Phytozome	SapurV1A.0817s0120.3.p

Publications ? help Back to Top
González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241]