PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0818s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 363aa    MW: 40709.3 Da    PI: 6.0668
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0818s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.93e-151462148
                            TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                            rg+W++eEd +l+ ++  +G+g +W + ++++g++R++k+c++rw++yl
  SapurV1A.0818s0020.1.p 14 RGPWSPEEDAKLKAYIDHFGTGgNWIALPQKIGLKRCGKSCRLRWLNYL 62
                            89*********************************************97 PP
2Myb_DNA-binding38.72.3e-1269111246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             g +++eEd ++  +    G++ W+ Ia+ ++ gRt++++k++w++
  SapurV1A.0818s0020.1.p  69 GGFSEEEDNIICSLYISIGSR-WSVIAAQLP-GRTDNDVKNYWNT 111
                             569******************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.304962IPR017930Myb domain
SuperFamilySSF466891.27E-2511109IPR009057Homeodomain-like
SMARTSM007172.7E-111364IPR001005SANT/Myb domain
PfamPF002493.7E-141462IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-231569IPR009057Homeodomain-like
CDDcd001673.89E-81662No hitNo description
PROSITE profilePS5129420.75463117IPR017930Myb domain
SMARTSM007176.1E-1167115IPR001005SANT/Myb domain
PfamPF002495.4E-1169111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.2E-2370117IPR009057Homeodomain-like
CDDcd001672.66E-871113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MGRAPCCDKN SVKRGPWSPE EDAKLKAYID HFGTGGNWIA LPQKIGLKRC GKSCRLRWLN  60
YLRPNIRHGG FSEEEDNIIC SLYISIGSRW SVIAAQLPGR TDNDVKNYWN TRLKKKLLGR  120
RKQSSFNRIS STNPVSNGVE DSPSSQALSN SALERLQLHM QLQNPISFFN NPALWPKLHP  180
FQEKKLLQSL NESFSPLMQY AFPSPQQGDE QKVETSRQLD DSDTRQQGHP KFSNSSVVGL  240
ENSLNGITSP DSYIPFSSGD LAMDLTIVSR AGVVEPADAA AQPVPNFQSE FENFLNSKTY  300
GFASQEDNIG EFGCFKEMNG SWEGMNWRSN DFETKDSSNS WDSASVLQFE GMFQDYELGY  360
NV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-23141177108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factors that activates genes required for endodermal differentiation but represses genes involved in proliferative divisions, thus regulating the transition from proliferation to differentiation in root endodermis (PubMed:26371322). Required for Casparian strip formation by positively regulating the expression of the Casparian strip genes CASP1, PER64 and ESB1 and other endodermis-specific genes, thus triggering correct localized lignin biosynthesis in root endodermis and subsequently regulating global ion homeostasis (PubMed:26124109, PubMed:26371322). {ECO:0000269|PubMed:26124109, ECO:0000269|PubMed:26371322}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0818s0020.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Directly up-regulated by SCARECROW (SCR), as part of the differentiation program controlled by SHORT-ROOT (SHR). {ECO:0000269|PubMed:24517883, ECO:0000269|PubMed:26371322}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006381830.20.0transcription factor MYB36
SwissprotQ9FKL24e-98MYB36_ARATH; Transcription factor MYB36
TrEMBLA0A2K2A3P20.0A0A2K2A3P2_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18620.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57620.12e-92myb domain protein 36
Publications ? help Back to Top
  1. Fernández-Marcos M, et al.
    Control of Arabidopsis lateral root primordium boundaries by MYB36.
    New Phytol., 2017. 213(1): p. 105-112
    [PMID:27891649]