PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0821s0150.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

HD-ZIP

Protein Properties

Length: 121aa MW: 13875.4 Da PI: 10.3909

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0821s0150.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.1	7.4e-19	68	120	2	54
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRak 54 rk+ ++tkeq Lee F+++++++ ++++ LA++l+L rqV vWFqNrRa+ SapurV1A.0821s0150.2.p 68 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 120 78889**********************************************98 PP
2	HD-ZIP_I/II	81	1.8e-26	68	120	1	53
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRAR 53 +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRAR SapurV1A.0821s0150.2.p 68 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRAR 120 69**************************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-18	54	120	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	9.7E-19	55	118	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.572	64	120	IPR001356	Homeobox domain
SMART	SM00389	6.6E-9	66	120	IPR001356	Homeobox domain
CDD	cd00086	4.34E-14	68	120	No hit	No description
Pfam	PF00046	2.8E-16	68	120	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 121 aa Download sequence Send to blast
MDGKRSGCEE PVVRAHDQLY RQASPHSAVS SFSSGRVKRE RDLSSEDIEV ERVSSRVSDE 60 DEDGTNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA RQLNLRPRQV EVWFQNRRAR 120 *

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0821s0150.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031336.1	8e-73	PREDICTED: homeobox-leucine zipper protein HAT22-like
Swissprot	P46604	2e-38	HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBL	B9HFT7	1e-70	B9HFT7_POPTR; HD-ZIP family protein
STRING	POPTR_0007s14590.1	2e-71	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37790.1	5e-40	HD-ZIP family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0821s0150.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence. Elife, 2017. [PMID:27697148] Song L, et al. A transcription factor hierarchy defines an environmental stress response network. Science, 2017. [PMID:27811239]