PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0827s0020.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

G2-like

Protein Properties

Length: 149aa MW: 15618.5 Da PI: 6.8893

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0827s0020.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	23	1.7e-07	5	29	30	54
G2-like 30 ktilelmkvkgLtlehvkSHLQkYR 54 k++++lm+++gLt+e+v SH +Y+ SapurV1A.0827s0020.1.p 5 KRVVQLMNIDGLTRENVVSHSRMYK 29 89**********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	6.1E-6	5	30	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 149 aa Download sequence Send to blast
MPSLKRVVQL MNIDGLTREN VVSHSRMYKS LRSWGLFSGG GAGGNGSTGG LSGGTGADTD 60 HLFASSLVLE PGRSCTANHH HQQMAAAAGH PVPFLPRQPL QAVHRMDASV ANTDPGRVEG 120 FEPPYGNGGR FVIDLFPSPV DLFPSPDD*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0827s0020.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460441.1	6e-24	transcription factor MYBC1
TrEMBL	B9H8R8	1e-22	B9H8R8_POPTR; Uncharacterized protein
STRING	POPTR_0006s03340.1	2e-23	(Populus trichocarpa)

Link Out ? help Back to Top
Phytozome	SapurV1A.0827s0020.1.p