PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0829s0080.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 2098aa    MW: 230749 Da    PI: 8.7015
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0829s0080.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH17.38.4e-0619731994627
                              -SGGGGTS--TTTTT-SS-SSS CS
                 zf-CCCH    6 CrffartGtCkyGdrCkFaHgp 27  
                              C++f +tG C+ G++Ck +H++
  SapurV1A.0829s0080.3.p 1973 CPTFEATGSCPQGSKCKLHHPK 1994
                              *****************99985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.13118631892IPR000571Zinc finger, CCCH-type
SMARTSM003560.0218631891IPR000571Zinc finger, CCCH-type
SMARTSM003567.318921916IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.2219181944IPR000571Zinc finger, CCCH-type
SMARTSM003560.002519181943IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.719451966IPR000571Zinc finger, CCCH-type
SMARTSM003560.9919451971IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.63819671995IPR000571Zinc finger, CCCH-type
SMARTSM003560.4319721994IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043484Biological Processregulation of RNA splicing
GO:0060149Biological Processnegative regulation of posttranscriptional gene silencing
GO:0016607Cellular Componentnuclear speck
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2098 aa     Download sequence    Send to blast
MDPRSSYFHH TKYANPPSPS PTLPPPPPLY PNSLNFHHHI NFLAPPPPQQ QPRPPQTPQF  60
SPRNLQFSYN HSPNHPQTHD NYHRQLSHHD LPHFTQLPRV SHQFNDERQP PRRLPEFDHR  120
AHEPRPDFRV FRNDQQTRHE LEGNPNPNPN SRLVQDRNIL IERESEHYHI RGGFGSNSDR  180
SYAGDFRTVA NQVRGFESNS GNYENRRRLN YDYHEKGSEN QRWFRDREVM IDQRDSSTEF  240
GSNEIGDGET RIATGKREHY RSREGNLEVE RHGSKRSREG SYEFNRTPRK QVQKKSALLR  300
LQQPNYRNRE DERVPYSGYV DDTKSSSFRG KDQESVFFRG KDKVIHTDCE MGEGEREGSP  360
VELDVSFKSN SLVAKAILTP SSSSVGAFET ILTPRNSKVR KVLDLAEDKD SNNSSMNKPN  420
KVAVEVGKGV SVASKASSSD KDLKKSREGV IASGITNVRD SSSLPLKNRV EMPMKRTVSV  480
RIGSSGKTSP LNGKKKKVVK RVVKKVVSHS STLSSSQPTK IRDEPVKADS SAHSPAEPLD  540
IDRAATVADL VDSQPCPIED TVIPENDRVE RFEKFMESGQ AGSRADSGNS SGKKNCSRSP  600
PGSSNHNKTK FGESFVNGDC AKGLHAISNI DNSLTKPLDE IISSDIGGVE DFSKQPCQNG  660
DSCSLENSAV RGSLKVMDSI EGNTDFGLLS LEKTIIHEDP LNSCIPMIGL DVSSINSQQR  720
ITVSDKGTSD VGGNEPCRNQ GSSLAESGIT DLLQGPSFPV GSNEIFSVPI SGETGNQNAV  780
IQLNQGAGTI LGSPNSFTNL EEINISGHGT GDGIGEELSQ DGVAKTLNSV PIRGSLDTKV  840
STGGSEEDAN EITKNDKKIE MPQLDLSRTD VPDMHLEPAN MVTSTTAHWV NTTLRLCFED  900
DATDQCTFSG AQFVDAGSQS CSNVVSALHE GSLTDVSAAK VSVRSSADVG QSGVSRWNEK  960
NRKSSVPQLE LCSPVESDDD EGPVFAGNST SGMEVPSNSC SSPTLPKGEV VVSDMDSLCS  1020
SDLLLAQKGF TALLENGSAG EHFSPVASIE DVFEVDGLKD VQSYLTVEDL AVKKVSSRGL  1080
FVSGVKDIIN TTPVVIGGRN QNDSMDIDAV EGAKVDINVA EVQVGIENVS DHCQIPSKPQ  1140
TQYMDQILPS IDAVDDGFPG AKNDSPCMSN NPSSFGDGFG VSSTNSGDEL MEIVPETLCD  1200
KDSPETLPDV MVTSLSKNSV EKIHENDDTI PVERAVINFS SNSSTSLSSS QKAKVVLNLD  1260
HTVERDQLLT GKTGHLPSQD SKITSQMPFI KNGELYGKKN HDSHAVSKIY SGRSSFVFTG  1320
SKSSASSSRI SKTRTWHRTD NCSDSAPPAN KAFLSTVPAL RQFPRKADRS QRTSYIRKGN  1380
SLVRKPTSVA QSPGLHGLSS SVYQLNSSGI DEPKKSAGSN SRIDLADPPN AVRTGGMDAS  1440
FEKPRTPSLS SVSKISNRAS NFLGGRASSP LAELLHSLCT ETVTIPAKLL ESNDIPKSSD  1500
KVLKISESPI IQNSQISNLE CHSDLNDVNN MVLANGKSLT YVKRKSNQLV AASNPCASSA  1560
QNAHNTSSSD SYYKRRKNQL IRTSLESQVK QIAPEESLNS EEQTALNSFS RNFSKRRLRK  1620
VATKTCKPSK LSLVWTLHGA QLSKNDGDSL RCGKVLPHLF PWKRATYRRS SLPNSSSISD  1680
HSSLSTIGRK LLLLRKRNTV YTRSKHGFSL RKSKVLSVGG SSLKWSKSIE KHSKKANEEA  1740
TLAVAAAERK KREQRGAVSI ACPTKSRNSS RERIFRIGSV RYKMDSSRRT LQRISDDESS  1800
SGALQKEKDA KKMYIPRRLM IGKDEYVRIG NGNQLVRDPK KRTRILASEK VRWSLHTARS  1860
RLARKRKYCQ FFTRFGKCNK DDGKCPFIHD SSKIAVCTKF LNGLCFNPDC KLTHKVIPER  1920
MPDCSYFLQG LCTNKNCPYR HVHVNPNAST CEGFLRGYCA DGNECPKKHS YVCPTFEATG  1980
SCPQGSKCKL HHPKNRTKEK KCKRSQENNA HGRYFGLMHI NATKMRNAVP GKLYVQDNDT  2040
ICFKGTTDYI SLDVSDEEMV ENNYPSDLHT AFGDSDPLNL QLGDLDELIK PVRIMNI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6fbs_C6e-201869199441168Cleavage and polyadenylation specificity factor subunit 4
6fuw_C6e-201869199441168Cleavage and polyadenylation specificity factor subunit 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0829s0080.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX8690553e-72JX869055.1 Populus euphratica microsatellite U7701 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011027445.10.0PREDICTED: uncharacterized protein LOC105127746 isoform X4
TrEMBLA0A2K2BF490.0A0A2K2BF49_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07810.10.0(Populus trichocarpa)