PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0829s0180.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 214aa    MW: 24979.7 Da    PI: 7.3251
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0829s0180.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.71.3e-27959151
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            krien+snrqvt+skRr gi+KKA+E+ vLCda+v+++if+s+g+++e++s
  SapurV1A.0829s0180.1.p  9 KRIENSSNRQVTYSKRRSGIIKKAKEITVLCDAQVSLVIFASSGRMHEFCS 59
                            79***********************************************96 PP
2K-box69.88.7e-2471169199
                   K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 
                             y+k+sgk+l++ak+e+l++e++++kke+++Lq e+Rhl+G+d+ sL +keL+ +e++L+++l  +R+k++e+  +  ++ +   +e 
  SapurV1A.0829s0180.1.p  71 YHKQSGKRLWDAKHEHLSNEIDRIKKENDSLQIELRHLKGQDILSLPHKELMAIEEALDTGLAAVRKKQMEFHSMLEQNEKILDEEF 157
                             8999*******************************************************************9999999999999999 PP

                   K-box  88 qeenkaLrkkle 99 
                             ++ +  L+++ +
  SapurV1A.0829s0180.1.p 158 KHLQFVLQQQEM 169
                             999999998865 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006632.142161IPR002100Transcription factor, MADS-box
SMARTSM004322.4E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.32E-35296IPR002100Transcription factor, MADS-box
CDDcd002651.52E-39280No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-28323IPR002100Transcription factor, MADS-box
PfamPF003195.6E-221057IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004048.5E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.5E-1583162IPR002487Transcription factor, K-box
PROSITE profilePS5129712.96784170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MGRGKIEIKR IENSSNRQVT YSKRRSGIIK KAKEITVLCD AQVSLVIFAS SGRMHEFCSP  60
STTVVDLLDK YHKQSGKRLW DAKHEHLSNE IDRIKKENDS LQIELRHLKG QDILSLPHKE  120
LMAIEEALDT GLAAVRKKQM EFHSMLEQNE KILDEEFKHL QFVLQQQEMA MEENAMEMEM  180
ENAYHQQRVR DYNSQVPFTF RVLPIQPNLQ ERM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A8e-16175173MEF2 CHIMERA
6byy_B8e-16175173MEF2 CHIMERA
6byy_C8e-16175173MEF2 CHIMERA
6byy_D8e-16175173MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may play role in specifying stamen and petal organ identity. {ECO:0000269|PubMed:23181568, ECO:0000269|Ref.1, ECO:0000305|PubMed:17920788}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00080ChIP-seqTransfer from AT5G20240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0829s0180.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU0291720.0EU029172.1 Populus deltoides MADS box transcription factor (PI) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002300964.11e-149floral homeotic protein PMADS 2
SwissprotQ0HA251e-119MADS9_VITVI; Agamous-like MADS-box protein MADS9
TrEMBLB9GU031e-147B9GU03_POPTR; Uncharacterized protein
STRINGPOPTR_0002s07920.11e-148(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43553255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G20240.14e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]