PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0834s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NAC

Protein Properties

Length: 251aa MW: 29426.7 Da PI: 6.3741

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0834s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	89.2	7.1e-28	2	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvka.eekewyfFskrdkkyatgkrknr.atksgyWk 84 +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ +P+dL+ ++ +a ++ e +++skr+ + +r + g Wk SapurV1A.0834s0010.1.p 2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILEMNVYERDPQDLEwNESTAlSNGERFYYSKREIND------SReVHGLGWWK 80 589**********.88********.89**********96433332556889999987753......3325678 PP NAM 85 atgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128 at + k+v++k ++ lvg k+ L+f+ + ++++++kt+W+mhey+l SapurV1A.0834s0010.1.p 81 ATSHVKKVYAKdhrDQPLVGNKRPLTFHrfkdsERNRNNAVKTNWIMHEYSL 132 ******96545555******8777656778889*******98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-31	2	147	IPR003441	NAC domain
PROSITE profile	PS51005	33.208	2	147	IPR003441	NAC domain
Pfam	PF02365	1.9E-16	3	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILEMNVYE RDPQDLEWNE STALSNGERF 60 YYSKREINDS REVHGLGWWK ATSHVKKVYA KDHRDQPLVG NKRPLTFHRF KDSERNRNNA 120 VKTNWIMHEY SLESRTTEWK LCKIKYKGKP SLQQHSSRND FETGSSTNVG VEQLDQERSL 180 VPADSAMPLD HYNQWCNMQQ LPLSPPYHPD DLPAPPSTSG GHNYYVNYQQ EELEPIVHEQ 240 PFPNLWSWMN *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-20	2	154	17	171	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-20	2	154	17	171	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-20	2	154	17	171	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-20	2	154	17	171	NO APICAL MERISTEM PROTEIN
3swm_A	6e-20	2	154	20	174	NAC domain-containing protein 19
3swm_B	6e-20	2	154	20	174	NAC domain-containing protein 19
3swm_C	6e-20	2	154	20	174	NAC domain-containing protein 19
3swm_D	6e-20	2	154	20	174	NAC domain-containing protein 19
3swp_A	6e-20	2	154	20	174	NAC domain-containing protein 19
3swp_B	6e-20	2	154	20	174	NAC domain-containing protein 19
3swp_C	6e-20	2	154	20	174	NAC domain-containing protein 19
3swp_D	6e-20	2	154	20	174	NAC domain-containing protein 19
4dul_A	6e-20	2	154	17	171	NAC domain-containing protein 19
4dul_B	6e-20	2	154	17	171	NAC domain-containing protein 19
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0834s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002310439.1	1e-145	NAC domain-containing protein 83
TrEMBL	B9HH64	1e-143	B9HH64_POPTR; Uncharacterized protein
STRING	POPTR_0007s02050.1	1e-144	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15526	6	12

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G15500.1	4e-22	NAC domain containing protein 3

Link Out ? help Back to Top
Phytozome	SapurV1A.0834s0010.1.p