PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0834s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family NAC
Protein Properties Length: 262aa    MW: 30677.2 Da    PI: 6.0846
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0834s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM89.55.8e-2821321128
                     NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknr.atksgyWk 84 
                             +p GfrF+Ptdeel+ + L +k++g++++l ++i e+++y+ eP+dL+ + +++ ++ e ++++kr+ +       +r +   g Wk
  SapurV1A.0834s0020.1.p   2 VPHGFRFNPTDEELI-QVLDRKASGQEMPL-HFILETNVYEREPQDLEwNeSTALSNGERFYYCKREIND------SReVHGLGWWK 80 
                             589************.88************.89**************9642333356699****998754......3325678**** PP

                     NAM  85 atgkdkevlsk...kgelvglkktLvfy.....kgrapkgektdWvmheyrl 128
                             at + k+v++k   ++ lvg k+ ++f+     + ++++++kt+W+mhey+l
  SapurV1A.0834s0020.1.p  81 ATSHVKKVYAKdhrDQPLVGNKRPMTFHrfkdsERNRNNAVKTNWIMHEYSL 132
                             **********96545555**********8777656778889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100532.5782147IPR003441NAC domain
SuperFamilySSF1019412.88E-312147IPR003441NAC domain
PfamPF023651.3E-163132IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MVPHGFRFNP TDEELIQVLD RKASGQEMPL HFILETNVYE REPQDLEWNE STALSNGERF  60
YYCKREINDS REVHGLGWWK ATSHVKKVYA KDHRDQPLVG NKRPMTFHRF KDSERNRNNA  120
VKTNWIMHEY SLESRATEWK LCKIKYKGKP SLQEEIESMI KKQHPSRNDF ETGSSTNVGV  180
EQLDQERSLV PADSAMPLDD HYNQWSNMQQ LPWPLSPPCH PDDLPAPPST SSGHYCVNYQ  240
QEELEPVVHE QPFPNLWSWM N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A5e-18215420174NAC domain-containing protein 19
3swm_B5e-18215420174NAC domain-containing protein 19
3swm_C5e-18215420174NAC domain-containing protein 19
3swm_D5e-18215420174NAC domain-containing protein 19
3swp_A5e-18215420174NAC domain-containing protein 19
3swp_B5e-18215420174NAC domain-containing protein 19
3swp_C5e-18215420174NAC domain-containing protein 19
3swp_D5e-18215420174NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0834s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2146282e-56AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310439.11e-148NAC domain-containing protein 83
TrEMBLB9HH641e-147B9HH64_POPTR; Uncharacterized protein
STRINGPOPTR_0007s02050.11e-147(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15526612
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27410.26e-20NAC family protein