PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0834s0140.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 249aa MW: 28496.3 Da PI: 5.4351

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0834s0140.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.4	4.4e-27	80	170	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY eYAk++GF++r+++ ++s +n ++ r+fvCs+eg+r+ +++ ++++ +r++tr gCka++++ ++ gkw+vtk+++eHn SapurV1A.0834s0140.1.p 80 DFYYEYAKQTGFTIRTNRIRHSLKNMAVIGRDFVCSREGFRAAKHSLrKDRALPPRPVTREGCKAMIRMAARDGGKWVVTKFVKEHN 166 6**************************************99988723444559**************************** PP FAR1 87 Hela 90 H+l+ SapurV1A.0834s0140.1.p 167 HKLM 170 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.0E-25	80	170	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MTSTTDGRSF LDSDGGSDEE VFESFGEHEA SQDGLLQQCI SQCAVDNDMI LTESSMENLS 60 VDGLEPYTGM AFPSLDDARD FYYEYAKQTG FTIRTNRIRH SLKNMAVIGR DFVCSREGFR 120 AAKHSLRKDR ALPPRPVTRE GCKAMIRMAA RDGGKWVVTK FVKEHNHKLM THCKFLGELP 180 TINILSEEEK DKKIQDLYHE LQRERERSAA FQQQLCMILK DIKEHEDFMS LRVEDIVKTL 240 KEIELCDL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0834s0140.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	7e-93	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002309805.1	1e-171	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024461384.1	1e-171	protein FAR1-RELATED SEQUENCE 5
TrEMBL	B9HH50	1e-169	B9HH50_POPTR; Uncharacterized protein
STRING	POPTR_0007s01950.1	1e-170	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15728	10	11

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-42	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0834s0140.1.p