PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0834s0150.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 254aa MW: 29401 Da PI: 6.5111

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0834s0150.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	73.5	4.4e-23	76	165	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY +Y++ +GF+vr++++++s+ n++++ ++fvCskeg+r+++ + +++ + + tr gC a++++ ++ gkw+vtk++++H+ SapurV1A.0834s0150.1.p 76 EFYFSYGRCTGFTVRIHHNRRSRINNQVIGQDFVCSKEGYRAKKYVHrKDRILPPPPITREGCGAMIRLALK-GGKWVVTKFVKDHT 161 6***************************************998882233334899***********.********** PP FAR1 87 Hela 90 H+l+ SapurV1A.0834s0150.1.p 162 HKLM 165 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-20	76	165	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 254 aa Download sequence Send to blast
MDKQSVHGFD SNESDLDLQG EAYECGRIED ELQNNLDFCV DEDNKTSVHS IERAVNAEGL 60 EPCVGMEFNS RDEAREFYFS YGRCTGFTVR IHHNRRSRIN NQVIGQDFVC SKEGYRAKKY 120 VHRKDRILPP PPITREGCGA MIRLALKGGK WVVTKFVKDH THKLMSPSKV PWRGSGKQLI 180 SEDEKDKRIR ELSLELYNER QKCKRRCAVY EEQLNMILQD LEKHTEHVSK KVDDVVKSIR 240 EIEEEHPDDS NSE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0834s0150.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011012931.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011012932.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011026428.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_011026429.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	B9HH49	1e-178	B9HH49_POPTR; Uncharacterized protein
STRING	POPTR_0007s01940.1	1e-179	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8861	30	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	1e-33	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0834s0150.1.p