PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0834s0170.3.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 175aa    MW: 20289.3 Da    PI: 10.2415
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0834s0170.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR186.93e-2712100290
                    FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 
                             fY+eYAk+ GF +r+ +s+ks+++g+i++r++ C+keg++ ++ ++ + + r+r+++r gC a++ vk+ek gkw vtk+  +HnH+
  SapurV1A.0834s0170.3.p  12 FYDEYAKREGFLTRIVSSRKSEHDGTIISRRLACNKEGFNLSSPNTGQVKIRKRESKREGCMAMILVKREKPGKWLVTKFMRDHNHP 98 
                             9*********************************************999************************************** PP

                    FAR1  89 la 90 
                             l+
  SapurV1A.0834s0170.3.p  99 LV 100
                             96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031018.9E-2512100IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MVFESEKSAR VFYDEYAKRE GFLTRIVSSR KSEHDGTIIS RRLACNKEGF NLSSPNTGQV  60
KIRKRESKRE GCMAMILVKR EKPGKWLVTK FMRDHNHPLV ISSKKGRPTP DEKDERIREL  120
SSQLHHTNRQ LAACREQLRT FMTYIEEHTM CMLKTVEGVV QNIREVESET RSSS*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0834s0170.3.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023892261.12e-99protein FAR1-RELATED SEQUENCE 7-like isoform X1
SwissprotQ9SZL85e-19FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBLF6HYS12e-93F6HYS1_VITVI; Uncharacterized protein
STRINGVIT_05s0102g00390.t014e-94(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43280.16e-55FAR1 family protein
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]