PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0845s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 206aa MW: 22119 Da PI: 7.0497

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0845s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	94.6	1.1e-29	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C++ Cvl+ ++ p++q ++ +++k+FG+s +++l++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++ SapurV1A.0845s0090.1.p 2 SCNGCRVLRKGCSETCVLRSCMhwitnPDAQGYATLFLAKFFGRSDLMSLISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWS 88 6***********************999****************************************************** PP DUF260 83 lqqqleqlkaelall 97 ++++++q+++e++l SapurV1A.0845s0090.1.p 89 GNWHVCQEAVETVLS 103 *******998875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.956	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.4E-25	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MSCNGCRVLR KGCSETCVLR SCMHWITNPD AQGYATLFLA KFFGRSDLMS LISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWSGN WHVCQEAVET VLSGGALRPL HGILTGFLAP 120 NCDESSDGFS AAVHDMAWNQ SKSFAKESNN EVVSDHHVNP CLARGIGGRG KRGREAVSFY 180 TGGESETISF ESSGGDQKRL LNLFV*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0845s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473874	2e-31	AB473874.1 Arabidopsis thaliana ASL41 mRNA for ASYMMETRIC LEAVES2-like 41 protein, complete cds.
GenBank	AY072144	2e-31	AY072144.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.
GenBank	AY122976	2e-31	AY122976.1 Arabidopsis thaliana unknown protein (At4g37540) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002301153.3	1e-132	LOB domain-containing protein 39
Swissprot	Q9FN11	3e-64	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	A0A1L6K5D3	1e-132	A0A1L6K5D3_POPTO; LOB domain-containing protein 39-like
STRING	POPTR_0002s12020.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	1e-66	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	SapurV1A.0845s0090.1.p

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]