PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0850s0170.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 343aa    MW: 37884.2 Da    PI: 6.7938
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0850s0170.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.88.2e-08249319655
                             HHHHHHHHHHHHHHHHHHHCTSCC.C.......................TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   6 nerErrRRdriNsafeeLrellPk.as....................kapskKlsKaeiLekAveYIksLq 55 
                             +++Er  R ri +++ +L++l+P+ +                      ++ +  + +++L +Av+YIk+Lq
  SapurV1A.0850s0170.1.p 249 SIAERVSRTRISERMRKLQDLVPNmDKvksfhfslsasfvslidnalFPHLQQTNTSDMLDLAVDYIKDLQ 319
                             5799999*****************988*******************76666679****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.792243318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.06E-10245333IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.98E-8247323No hitNo description
SMARTSM003538.0E-6249324IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.9E-5250319IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-11256334IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MMDAMNNLNC GTRLQQQQHQ HQSNYSASQG FYQNQSKPPL PDQKSGSEIN YRSMNSMGME  60
RLPSMKTNSS NNSNLVRHSS SPAGLFSDIN IEFENGYAVL RGMGDLGSGN GDTNYSAASR  120
PPPLGRMGSV AEMGNKNMGE NSPESGGFGE ARSSNYVSGY PIGSWDDSAM LSAGSKRHFT  180
DDDATLSGLN ASETQHDEEG GSRPPMLARH MSLPKTAAEI SVIEKFLYIQ DSVPCRIRAK  240
RGFATHPRSI AERVSRTRIS ERMRKLQDLV PNMDKVKSFH FSLSASFVSL IDNALFPHLQ  300
QTNTSDMLDL AVDYIKDLQR EVQILSEIRE RCTCINKQEQ EP*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0850s0170.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164095e-42AC216409.1 Populus trichocarpa clone POP024-J08, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037857.11e-180PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_011037858.11e-180PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_011037859.11e-180PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_011037860.11e-180PREDICTED: transcription factor bHLH122-like isoform X1
RefseqXP_011037861.11e-180PREDICTED: transcription factor bHLH122-like isoform X1
TrEMBLA0A3N7EFA10.0A0A3N7EFA1_POPTR; Uncharacterized protein
STRINGPOPTR_0003s22290.11e-155(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF41853455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.11e-54bHLH family protein