PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0851s0010.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LBD

Protein Properties

Length: 231aa MW: 25002.2 Da PI: 6.6501

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0851s0010.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	95.6	5.2e-30	4	108	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilk 82 +C++C+vlr++C +dC + p++ p++q++++ +++k++G++ +++l+++ p++ r+++++sl+yeA+ r+ +PvyG+vg++++ SapurV1A.0851s0010.1.p 4 SCNGCRVLRKGCGDDCSIKPCLqwiknPDSQANATLFLAKFYGRAGLMNLINDGPQHLRPAIFKSLLYEACGRIVNPVYGSVGLLWT 90 6************************************************************************************ PP DUF260 83 lqqqleqlkaelallkee 100 +++q +q+++e++l +e+ SapurV1A.0851s0010.1.p 91 GSWQQCQAAVEAVLKGEP 108 *********9988765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	16.379	3	109	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.0E-24	4	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 231 aa Download sequence Send to blast
MRASCNGCRV LRKGCGDDCS IKPCLQWIKN PDSQANATLF LAKFYGRAGL MNLINDGPQH 60 LRPAIFKSLL YEACGRIVNP VYGSVGLLWT GSWQQCQAAV EAVLKGEPIT EIESTDQLAL 120 DASDIRHVSK EGDWSASHHL RKVKTKSLFK RSASKPKSSR GEAEHTAFEL MVGCDGLRSV 180 SPDSVLSWRP SSGSDSGETD SLSVETVEAC KPDEPAERSD LGLDLTLGNY *

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0851s0010.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002317916.3	1e-130	LOB domain-containing protein 40
Swissprot	Q9M886	2e-70	LBD41_ARATH; LOB domain-containing protein 41
TrEMBL	A0A2K1Y9E0	1e-129	A0A2K1Y9E0_POPTR; Uncharacterized protein
STRING	POPTR_0012s05340.1	1e-130	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1546	34	99

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G02550.1	1e-72	LOB domain-containing protein 41

Link Out ? help Back to Top
Phytozome	SapurV1A.0851s0010.1.p