PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0860s0050.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 226aa    MW: 23798.2 Da    PI: 10.1626
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0860s0050.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.53.2e-10145189554
                             HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             h+++Er RR+ri +++  L+el+P+ +      K + a++L + v+Y+k L
  SapurV1A.0860s0050.2.p 145 HSIAERLRRERIAERIRALQELVPSvN------KTDRATMLDEIVDYVKFL 189
                             99***********************55......****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.1E-15138200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.215140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-15142200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-7145189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.1E-11146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0031347Biological Processregulation of defense response
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MANKPTEPPT DDFLQEILGM PNYASAEADA GLAGAAAAAQ ASMMLQLSSG DGSGHISALG  60
GAPGGGSTGF HGFPLGLSLE QGKGGFLKPE DASGSGKRFR DEIVDGRAKN VFHGQPMPTT  120
VAIAPHPPSM RPRVRARRGQ ATDPHSIAER LRRERIAERI RALQELVPSV NKTDRATMLD  180
EIVDYVKFLR LQVKVLSMSR LGAAGAVAPL VTDIPLSSVE VIKKR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1149154RLRRER
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0860s0050.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006383684.11e-121transcription factor UNE12
SwissprotO227689e-77UNE12_ARATH; Transcription factor UNE12
TrEMBLU5GGP31e-120U5GGP3_POPTR; BHLH family protein
STRINGPOPTR_0005s23930.11e-121(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.27e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]