PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0865s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family GRAS
Protein Properties Length: 112aa    MW: 12671.2 Da    PI: 4.6568
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0865s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS56.36.5e-181110270374
                    GRAS 270 sleaklpreseerikvErellgreivnvvacegae...rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrve. 352
                             +le+++ ++s+er ++Ere  +r+iv v+ac +++     er+e+  +W+ rl+ea F+pv +s+++++++k+ll+++k  g+ +  
  SapurV1A.0865s0080.1.p   1 MLEESFVPTSNERLMLERE-SSRNIVRVLACDEENgggECERRERGIQWSGRLREA-FSPVGFSDDVVDDVKALLKRYK-SGWALVl 84 
                             57899999***********.9**********9887666799*************98.**********************.5555544 PP

                    GRAS 353 ....eesgslvlgWkdrpLvsvSaWr 374
                                 +++  ++l+Wk++p+v++SaW+
  SapurV1A.0865s0080.1.p  85 aqgdNHESGIYLTWKEEPVVWASAWK 110
                             46645567778**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035142.2E-151110IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 112 aa     Download sequence    Send to blast
MLEESFVPTS NERLMLERES SRNIVRVLAC DEENGGGECE RRERGIQWSG RLREAFSPVG  60
FSDDVVDDVK ALLKRYKSGW ALVLAQGDNH ESGIYLTWKE EPVVWASAWK P*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B7e-283111370474Protein SHORT-ROOT
5b3h_B5e-283111316420Protein SHORT-ROOT
5b3h_E5e-283111316420Protein SHORT-ROOT
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification (By similarity). {ECO:0000250}.
UniProtTranscription factor required for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. {ECO:0000269|PubMed:17446396}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0865s0080.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2176431e-125AC217643.1 Populus trichocarpa clone POP035-K18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372828.11e-67protein SHORT-ROOT
RefseqXP_011037138.19e-68PREDICTED: protein SHORT-ROOT-like
RefseqXP_024444296.11e-67protein SHORT-ROOT-like
SwissprotA2YN561e-29SHR1_ORYSI; Protein SHORT-ROOT 1
SwissprotQ8H2X81e-29SHR1_ORYSJ; Protein SHORT-ROOT 1
TrEMBLU5FI433e-66U5FI43_POPTR; Uncharacterized protein
STRINGPOPTR_0017s05450.14e-67(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37650.14e-22GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]