PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0881s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

Trihelix

Protein Properties

Length: 992aa MW: 111085 Da PI: 7.3028

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0881s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	25.7	3e-08	226	281	20	75
trihelix 20 rlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtses 75 ++ rgk ++ + +ev++++ ++ ++r +k+ kw+n+ ++++k+ e+e++ + e+ SapurV1A.0881s0050.1.p 226 QSTRGKTRADKDREVAEFLNRHEVHRDAKTAGTKWDNMLGEFRKVYEWERGDKREQ 281 556789999999**************************************974433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	5.35E-17	837	974	IPR011009	Protein kinase-like domain
Gene3D	G3DSA:1.10.510.10	8.9E-10	844	981	No hit	No description
CDD	cd00180	7.03E-13	847	975	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 992 aa Download sequence Send to blast
MGESKGETTK KQQQLSSSSS PKGPIEESTE LRPLHHQQTT ASVVTGAPFI SSAPLFVPIG 60 ATSSPFEQQF ETVNPKRARY SSAQWKLLPS ASQQQHPPPT QAQMATAVSS EPTPSLTINP 120 IQQKQPRTTA EASSSDTNSS PLRSPIPSLS AASAQETSKP EGDPHQHQFR KGKYVSPVWK 180 PNEMLWLARA WRFQYQGGSD LTSRVEQLPE ATTGQVSSGD TAVAVQSTRG KTRADKDREV 240 AEFLNRHEVH RDAKTAGTKW DNMLGEFRKV YEWERGDKRE QMGKSYFRLS PYERKAHRLP 300 ASFDEEVFEE LSQFMGPKMR SQSRGSSLIG SCDDSSRGAS LAAARALPPP PPIKEDDLSL 360 SGRTRQLVMT SGGETYFHGT RGSLLGFEAA MDAAAGSSST KELRRIGKVR MTWEESVSLW 420 GEEGEHHRGR VRLQGSSFLN ADELTFFDDS MVACTMEAFE DGALKGFSVD KFVSGQQIKV 480 FGRRKPSPSA SVTPSGFTER VQLPLTEPSI RLPPWEFQDP TEYYVGCLRV PPTTLPSLFE 540 LSWYLQEPPP EELRFPLRRD VYRDLPQGKE FFFTISNDPL DCRGITSDIL SSIIRTNPSI 600 SGATSSSRDS FIGVWDDCIN RIVSKFCSVE VVIVRKQPSS PMVDTLQDEW PNVTGFVRNF 660 CLWRGEETDQ LREGQVDPSS SIIEKLLWTY LDLPYILGYY AVGYLVTFCA LCRSQDRIIR 720 TDLYSLDLSS PVERLKALVP CYRVAGLLPL LADRCFNNFS NGGTYKHLTF SDFERVDMGN 780 GNIMEMTPNT VTRFFSSRRK WAAVKEIYDC LDHRIPHAEF IYRSSEKDLA LVFKPRGVKF 840 KPNNCEQLVE ALKYVTQALV ALHDLSFMHR DLSWDKVMRR SDRENEWFVS GFDEAVGAPQ 900 LNPVHGVGES RGRHAPEMGR GMHGVKVDVW GVGHLLRTCV LGPNGVPKML RELQNRCLDQ 960 NPEQRPTAAD CYHHLLQVQS SLQPSSSGVP Y*

Sequence ? help Back to Top

Protein Sequence Length: 992 aa Download sequence Send to blast

MGESKGETTK KQQQLSSSSS PKGPIEESTE LRPLHHQQTT ASVVTGAPFI SSAPLFVPIG  60
ATSSPFEQQF ETVNPKRARY SSAQWKLLPS ASQQQHPPPT QAQMATAVSS EPTPSLTINP  120
IQQKQPRTTA EASSSDTNSS PLRSPIPSLS AASAQETSKP EGDPHQHQFR KGKYVSPVWK  180
PNEMLWLARA WRFQYQGGSD LTSRVEQLPE ATTGQVSSGD TAVAVQSTRG KTRADKDREV  240
AEFLNRHEVH RDAKTAGTKW DNMLGEFRKV YEWERGDKRE QMGKSYFRLS PYERKAHRLP  300
ASFDEEVFEE LSQFMGPKMR SQSRGSSLIG SCDDSSRGAS LAAARALPPP PPIKEDDLSL  360
SGRTRQLVMT SGGETYFHGT RGSLLGFEAA MDAAAGSSST KELRRIGKVR MTWEESVSLW  420
GEEGEHHRGR VRLQGSSFLN ADELTFFDDS MVACTMEAFE DGALKGFSVD KFVSGQQIKV  480
FGRRKPSPSA SVTPSGFTER VQLPLTEPSI RLPPWEFQDP TEYYVGCLRV PPTTLPSLFE  540
LSWYLQEPPP EELRFPLRRD VYRDLPQGKE FFFTISNDPL DCRGITSDIL SSIIRTNPSI  600
SGATSSSRDS FIGVWDDCIN RIVSKFCSVE VVIVRKQPSS PMVDTLQDEW PNVTGFVRNF  660
CLWRGEETDQ LREGQVDPSS SIIEKLLWTY LDLPYILGYY AVGYLVTFCA LCRSQDRIIR  720
TDLYSLDLSS PVERLKALVP CYRVAGLLPL LADRCFNNFS NGGTYKHLTF SDFERVDMGN  780
GNIMEMTPNT VTRFFSSRRK WAAVKEIYDC LDHRIPHAEF IYRSSEKDLA LVFKPRGVKF  840
KPNNCEQLVE ALKYVTQALV ALHDLSFMHR DLSWDKVMRR SDRENEWFVS GFDEAVGAPQ  900
LNPVHGVGES RGRHAPEMGR GMHGVKVDVW GVGHLLRTCV LGPNGVPKML RELQNRCLDQ  960
NPEQRPTAAD CYHHLLQVQS SLQPSSSGVP Y*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0881s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030014.1	0.0	PREDICTED: uncharacterized protein LOC105129591
TrEMBL	B9I4H2	0.0	B9I4H2_POPTR; Uncharacterized protein
STRING	POPTR_0012s14050.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	9e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.0881s0050.1.p