PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0881s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 251aa    MW: 28279.7 Da    PI: 5.8686
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0881s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.72.8e-1076127154
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                             +++a +e+ErrRR++i +  + L  llP  +    ++K s ++ L +A +YI++L
  SapurV1A.0881s0070.1.p  76 KKMARKEIERRRRKQISTLHASLGNLLPReL---IKGKRSTSDHLNEADKYIRHL 127
                             68999************************88...********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.105.3E-1072145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474598.37E-1274145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088812.50675127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-776127IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MFPFQQNLDE FLAQISSNLP YQEDFATDFQ YLIYGQESVH GICKQTISVD EIQKHKILAS  60
SNASDHSGNI IRDDEKKMAR KEIERRRRKQ ISTLHASLGN LLPRELIKGK RSTSDHLNEA  120
DKYIRHLNCN IQELSAKRDE LNKLFNSSTF EHGTEISGHN LLDCAKVRPI LGGVEIVVSG  180
GCGEEGVPLS RVLETLLEEG FDAVSYISTQ KDERRYGTIQ CQATDRNCID SDGLQRKLND  240
VISLSSYVDF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0881s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002318855.11e-136transcription factor bHLH120
RefseqXP_011030013.11e-136PREDICTED: transcription factor bHLH120-like
TrEMBLA0A3N7FW131e-135A0A3N7FW13_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14070.11e-135(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25410.14e-27bHLH family protein