PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0881s0080.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 243aa    MW: 27437.1 Da    PI: 8.2373
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0881s0080.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.32.4e-1266118155
                             CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                             ++++h  +Er+RR+++ + ++ Lr llP ++   ++K s ++   + v+YIk+Lq
  SapurV1A.0881s0080.1.p  66 QKMMHRNIERQRREEMTTLYASLRALLPLDF--IKGKRSISDHMNESVNYIKYLQ 118
                             6899*************************75..*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.78E-1064122No hitNo description
SuperFamilySSF474594.06E-1365132IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.5165117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-966118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-1067133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.6E-471123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MFPLHQGDEL CFNTSSNPHQ QHSIPQDLIL AQYAALHGSD TATKMENGRR RNLISMDSNN  60
EVARDQKMMH RNIERQRREE MTTLYASLRA LLPLDFIKGK RSISDHMNES VNYIKYLQKK  120
IKELSAKRDG LKKLSNLSFD APPSESSNKY SPISSVTLHP YPGGVEIVFD SDFRGQYFPL  180
SRVLQVLLED GISVVNCVST KVNERLFHTV QTEVDDPASL NLSELRQKLT LLVVSSTSDL  240
SK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0881s0080.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011030012.11e-148PREDICTED: transcription factor bHLH118-like
SwissprotQ9FLI16e-44BH036_ARATH; Transcription factor bHLH36
TrEMBLB9I4H51e-145B9I4H5_POPTR; Uncharacterized protein
STRINGPOPTR_0012s14080.11e-146(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF79233125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51780.19e-46bHLH family protein