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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | SapurV1A.0883s0060.1.p | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
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| Family | C3H | ||||||||
| Protein Properties | Length: 119aa MW: 13059.7 Da PI: 8.856 | ||||||||
| Description | C3H family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | zf-CCCH | 41.9 | 1.7e-13 | 10 | 35 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26
+++++C+f+++tG+Ck+G++Ck++H+
SapurV1A.0883s0060.1.p 10 PGQAECDFYMKTGECKFGETCKYHHP 35
5789*********************8 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50103 | 15.15 | 9 | 37 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.5E-6 | 9 | 36 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 3.4E-7 | 9 | 38 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 4.1E-11 | 11 | 35 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 4.5E-5 | 15 | 35 | IPR000571 | Zinc finger, CCCH-type |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0046872 | Molecular Function | metal ion binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 119 aa Download sequence Send to blast |
MGSAVYPQRP GQAECDFYMK TGECKFGETC KYHHPIDRSA PTAKQTESLT VKLTLAGLPR 60 REVVNIPSFM VRVDSQKHID FSLTSPFGGG RPGRVKRKNQ KLNSKKASGG DGDEEDEE* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 5vyc_J4 | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 5vyc_J5 | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 5vyc_J6 | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6d90_KK | 6e-20 | 60 | 116 | 138 | 194 | uS4 |
| 6d9j_KK | 6e-20 | 60 | 116 | 138 | 194 | uS4 |
| 6ek0_SJ | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g18_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g4s_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g4w_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g51_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g53_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g5h_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6g5i_J | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6hcf_K1 | 6e-20 | 60 | 116 | 138 | 194 | Ribosomal protein S9 (Predicted) |
| 6hcj_K2 | 6e-20 | 60 | 116 | 138 | 194 | Ribosomal protein S9 (Predicted) |
| 6hcm_K1 | 6e-20 | 60 | 116 | 138 | 194 | Ribosomal protein S9 (Predicted) |
| 6hcq_K2 | 6e-20 | 60 | 116 | 138 | 194 | Ribosomal protein S9 (Predicted) |
| 6ip5_3I | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6ip6_3I | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| 6ip8_3I | 6e-20 | 60 | 116 | 138 | 194 | 40S ribosomal protein S9 |
| Search in ModeBase | ||||||
| Functional Description ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Description | |||||
| UniProt | Involved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}. | |||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | SapurV1A.0883s0060.1.p |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | EF144949 | 2e-79 | EF144949.1 Populus trichocarpa clone WS0111_B18 unknown mRNA. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_002312214.2 | 6e-33 | zinc finger CCCH domain-containing protein 37 isoform X2 | ||||
| Refseq | XP_024463159.1 | 6e-33 | zinc finger CCCH domain-containing protein 37 isoform X1 | ||||
| Swissprot | Q941Q3 | 2e-23 | C3H37_ARATH; Zinc finger CCCH domain-containing protein 37 | ||||
| TrEMBL | A0A2K1ZDR6 | 1e-31 | A0A2K1ZDR6_POPTR; Uncharacterized protein | ||||
| TrEMBL | A0A2K1ZDR7 | 3e-32 | A0A2K1ZDR7_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0008s07980.1 | 3e-32 | (Populus trichocarpa) | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT3G12680.1 | 1e-25 | floral homeotic protein (HUA1) | ||||
| Link Out ? help Back to Top | |
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| Phytozome | SapurV1A.0883s0060.1.p |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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