PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0883s0060.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 84aa    MW: 9087.18 Da    PI: 6.9274
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0883s0060.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH42.88.9e-141035126
                            --S---SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                            +++++C+f+++tG+Ck+G++Ck++H+
  SapurV1A.0883s0060.2.p 10 PGQAECDFYMKTGECKFGETCKYHHP 35
                            5789*********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.15937IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6936IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.57E-7938IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-111135IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.4E-51535IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 84 aa     Download sequence    Send to blast
MGSAVYPQRP GQAECDFYMK TGECKFGETC KYHHPIDRSA PTAKQTESLT VKLTLAGLPR  60
REGWEAGGQY SIFHGEGGLA EAH*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0883s0060.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024463159.18e-33zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q37e-23C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLA0A2K1ZDR62e-31A0A2K1ZDR6_POPTR; Uncharacterized protein
TrEMBLA0A2K1ZDR73e-32A0A2K1ZDR7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s07980.14e-33(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.13e-25floral homeotic protein (HUA1)