PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0893s0110.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 150aa    MW: 17588.2 Da    PI: 9.2259
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0893s0110.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3314.6e-10589287
                            EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
                      B3  2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                             k+l  +d+  + rl++p +++e+    g+  +s++l+++d+ g+   +++   ++  ++ vl++GW +Fv + gL++gD  v+ ++++
  SapurV1A.0893s0110.1.p  5 SKEL--KDTDVRVRLSFPTHCLEHLdfAGN--NSVDLRVKDSCGELRVIRCLKrNGDYEKPVLSRGWLKFVADYGLRVGDKAVLLREDD 89
                            5666..556666789***999966676444..799*********9999999653444455********************999886554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.59E-11391IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.9E-12391IPR015300DNA-binding pseudobarrel domain
CDDcd100176.80E-143102No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MEIFSKELKD TDVRVRLSFP THCLEHLDFA GNNSVDLRVK DSCGELRVIR CLKRNGDYEK  60
PVLSRGWLKF VADYGLRVGD KAVLLREDDH NLGSQFRIEA KRRIVLFGRE AWGHDKSYFL  120
ALIRMERACS GQIHIYIYRE RERERERTS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0893s0110.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2103441e-116AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002303154.31e-65uncharacterized protein LOC7480761
TrEMBLA0A2K2B0472e-64A0A2K2B047_POPTR; Uncharacterized protein
STRINGPOPTR_0003s01220.15e-66(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12594414