PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0896s0030.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YC

Protein Properties

Length: 235aa MW: 25295.4 Da PI: 5.2521

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0896s0030.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	179.3	3.4e-56	46	150	1	102
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavt 84 ql++fw++q ie+++dfknh+lPlarikki+kadedv+misaeaP+l++kacelfilelt+rswlhaeenkrrtl+k+diaaa+t SapurV1A.0896s0030.1.p 46 QLQMFWSYQrqeIEQVNDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 132 89***998899********************************************************************** PP NF-YC 85 rtdifdflvdivprdelk 102 rtdifdflvdivprde+k SapurV1A.0896s0030.1.p 133 RTDIFDFLVDIVPRDEIK 150 *************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47113	2.85E-34	25	140	IPR009072	Histone-fold
Pfam	PF00808	1.6E-20	68	131	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	6.9E-37	69	146	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 235 aa Download sequence Send to blast
MDNTNHQPQS TAYPPQPTTP PAAAAAASGA PSSAPFHHLL QQQQQQLQMF WSYQRQEIEQ 60 VNDFKNHQLP LARIKKIMKA DEDVRMISAE APILFAKACE LFILELTIRS WLHAEENKRR 120 TLQKNDIAAA ITRTDIFDFL VDIVPRDEIK EEAAGLGGIV GATASGVPYY YPPMGQPAAG 180 GMMIGRPAVD PATGVYVQPP SQAWQSVWQT AAAEDGSYGS GGASGGHGNL DGQG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5g49_B	5e-55	54	146	3	95	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	118	124	RRTLQKN

Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0896s0030.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC216683	0.0	AC216683.1 Populus trichocarpa clone POP028-P04, complete sequence.
GenBank	EF147023	0.0	EF147023.1 Populus trichocarpa clone WS01226_F03 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011023993.1	1e-133	PREDICTED: nuclear transcription factor Y subunit C-1-like
Refseq	XP_024442549.1	1e-133	nuclear transcription factor Y subunit C-1 isoform X1
Refseq	XP_024442550.1	1e-133	nuclear transcription factor Y subunit C-1 isoform X2
Swissprot	Q9SMP0	1e-109	NFYC1_ARATH; Nuclear transcription factor Y subunit C-1
TrEMBL	A0A2I4KKG4	1e-132	A0A2I4KKG4_POPTR; NF-YC family protein
STRING	POPTR_0015s10940.1	1e-132	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11071	30	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48590.1	1e-108	nuclear factor Y, subunit C1

Link Out ? help Back to Top
Phytozome	SapurV1A.0896s0030.1.p

Publications ? help Back to Top
Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2015. [PMID:24831307] Shi H,Chan ZL AtHAP5A modulates freezing stress resistance in Arabidopsis independent of the CBF pathway. Plant Signal Behav, 2014. 9(7): p. e29109 [PMID:25763489] Tang Y, et al. Arabidopsis NF-YCs Mediate the Light-Controlled Hypocotyl Elongation via Modulating Histone Acetylation. Mol Plant, 2017. 10(2): p. 260-273 [PMID:27876642] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]