PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0896s0120.4.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 173aa    MW: 20200.7 Da    PI: 10.5733
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0896s0120.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF86.21.9e-271059251
                            ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
                  SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                            r en ++rqvtfskRrng+lKKA+ELS+LCdaev+++ifs+tgk y ++s
  SapurV1A.0896s0120.4.p 10 RLENPTRRQVTFSKRRNGLLKKAFELSILCDAEVSLVIFSPTGKCYQFAS 59
                            789*********************************************86 PP
2K-box75.91e-25821701098
                   K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                             +++  e ++ e++ Lkk i++++ ++Rh +Ged+e L +keL+qLe+qL+++ ++iRskK +++ e+i+ l+ k++++qeen++L+k
  SapurV1A.0896s0120.4.p  82 QTRSLECWRCEIEELKKIINKMEAQLRHCIGEDIEMLGMKELKQLERQLKTGAERIRSKKIRIIAEHINWLKGKQRAIQEENTRLKK 168
                             5667899******************************************************************************99 PP

                   K-box  97 kl 98 
                             ++
  SapurV1A.0896s0120.4.p 169 RV 170
                             76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.165161IPR002100Transcription factor, MADS-box
SMARTSM004321.5E-37160IPR002100Transcription factor, MADS-box
CDDcd002655.35E-35270No hitNo description
SuperFamilySSF554552.09E-30272IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-28323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-251157IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004045.2E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2283170IPR002487Transcription factor, K-box
PROSITE profilePS5129712.97686172IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MGRGKVVLQR LENPTRRQVT FSKRRNGLLK KAFELSILCD AEVSLVIFSP TGKCYQFASH  60
EMERTVARYR SEVCLSGPSD PQTRSLECWR CEIEELKKII NKMEAQLRHC IGEDIEMLGM  120
KELKQLERQL KTGAERIRSK KIRIIAEHIN WLKGKQRAIQ EENTRLKKRV RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A2e-20185182MEF2C
5f28_B2e-20185182MEF2C
5f28_C2e-20185182MEF2C
5f28_D2e-20185182MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1164170RLKKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0896s0120.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011044117.11e-102PREDICTED: truncated transcription factor CAULIFLOWER D-like isoform X2
TrEMBLB9I3T71e-96B9I3T7_POPTR; Uncharacterized protein
STRINGGorai.007G043400.11e-77(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26310.11e-45MIKC_MADS family protein