PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0903s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 332aa    MW: 36346.2 Da    PI: 10.0027
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0903s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.52e-31260316358
                             -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS CS
                    WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnh 58 
                             D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp+++++tYegeHnh
  SapurV1A.0903s0010.1.p 260 DDYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERALDDPSMLVVTYEGEHNH 316
                             99************************988**************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105333.1E-18211256IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.7E-33246316IPR003657WRKY domain
PROSITE profilePS5081130.756253319IPR003657WRKY domain
SuperFamilySSF1182909.81E-27256316IPR003657WRKY domain
SMARTSM007744.5E-38258318IPR003657WRKY domain
PfamPF031064.0E-27260316IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MAVELMMGYR NDSFVIASKM EENAVQEAAS GLESVNKLIR LLSQQNPHQS STSTSRTSMD  60
MEIDCKAVAD VAVSKFKKVI SLLGRNRTGH ARFRRAPNST PPIDQRQELS YQVPEANSKV  120
YYALPIQQVP PPVLNQNHYP TLVPKNGVIE RKDSAASTIN FSYSSAGNSF VSSLTGDTDS  180
KQPSSSSAFQ FTNVSQASSA GKPPLSTSSL KRKCSSENLD SAGKCASSGR CHCSKKRKMR  240
LKRVVRVPAI SLKMSDIPPD DYSWRKYGQK PIKGSPHPRG YYKCSSVRGC PARKHVERAL  300
DDPSMLVVTY EGEHNHIISV AETSNLILES S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A8e-212563181576Probable WRKY transcription factor 4
2lex_A8e-212563181576Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0903s0010.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1482100.0EF148210.1 Populus trichocarpa clone WS0128_M02 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006380693.10.0probable WRKY transcription factor 7 isoform X2
SwissprotQ9STX02e-96WRKY7_ARATH; Probable WRKY transcription factor 7
TrEMBLA9PII70.0A9PII7_POPTR; Uncharacterized protein
STRINGPOPTR_0007s10670.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21773486
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24240.14e-88WRKY DNA-binding protein 7