PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0916s0020.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 650aa    MW: 70595.5 Da    PI: 6.9724
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0916s0020.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.34.2e-061028625
                            -SGGGGTS--TTTTT-SS-S CS
                 zf-CCCH  6 CrffartGtCkyGdrCkFaH 25
                            C +f++ G C++G++C++aH
  SapurV1A.0916s0020.2.p 10 CTDFLK-GNCRRGESCRYAH 28
                            9*****.************* PP
2zf-CCCH17.95.3e-067393526
                            --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH  5 lCrffartGtCkyGdrCkFaHg 26
                            +C+ffa+ G C+ G  C+F+H 
  SapurV1A.0916s0020.2.p 73 PCKFFAA-GNCQNGKFCRFSHH 93
                            7**9999.*************5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003560.0056430IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.042431IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3946895IPR000571Zinc finger, CCCH-type
SMARTSM003560.167094IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-57193IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 650 aa     Download sequence    Send to blast
MGSGRSAICC TDFLKGNCRR GESCRYAHHG ASDPSGRGSA NEVIRERDND RRHRYASPER  60
HAERETRRAA DIPCKFFAAG NCQNGKFCRF SHHNQTLASP DKRSRDVRCP PSQNSDELEK  120
SWNGPKWSDS HTSDSAKLSE DKNEKLDAPD LRLSAHHMDD GWGCNPVEDK TRSNPPTNEL  180
VEINKKKAFQ WKTENSGDIT NVSEQRAPEN WFGDMEMSPD WNYRLQPSNH INKGSSPELH  240
EGSGRVHDTA AVIPPMSNET SSIQQGFNLK EVGGGALSHH DDSVTAKTAS SYINISATAL  300
ASQNFNKNGQ GSNASPIPNL NTAGQIQEGI LTNASRGGTT TNPQSQTLFQ ERTVINIPDT  360
GNPNAPHANL GIPAAQNMAS NGHLNQPTNL SASLVQLLAD GQQLPQLHAA HNSHDCTFAN  420
SESTVAVKPD SAATIQPNQA VEPLKQYDPI CDSIEHGKLN VYTNPPDKKL ELPSKSLSPS  480
ALAAAPNGSD SNKFCSEQES NEESSQLNQP APAASSEATK ENNGAGSGEG NKVQEQDKTA  540
QKNGPLENSD GDGKADESKK NKDAKGNRAF KFSLVEFVKD LLKPAWKEGQ MSKDAYKNIV  600
KKVVDKVTGT MHSASIPTTQ EKIEQYLSVS KPKLTKLVQA YAEKFQKDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0916s0020.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002307020.30.0zinc finger CCCH domain-containing protein 38
TrEMBLA0A3N7F0G10.0A0A3N7F0G1_POPTR; Uncharacterized protein
STRINGPOPTR_0005s06240.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.12e-17C3H family protein