PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0934s0060.4.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YB

Protein Properties

Length: 137aa MW: 15210.2 Da PI: 4.7538

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0934s0060.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	66.2	6.6e-21	2	74	14	86
NF-YB 14 srimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvy 86 ++i+k++lP + ++++da++++ ec +efi +v+se+++ c re+++ti+++ +l al lGf +y+e++ + SapurV1A.0934s0060.4.p 2 TKIIKEMLPPDVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAA 74 68******************************************************************98654 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	4.2E-33	2	120	IPR009072	Histone-fold
Pfam	PF00808	3.8E-18	2	59	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	1.5E-29	2	122	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MTKIIKEMLP PDVRVARDAQ DLLIECCVEF INLVSSESNE VCSREDKRTI APEHVLKALE 60 VLGFGEYIEE VYAAYEQHKL ETMHDSLKGG KWSNGAAMTE EEAAAAQQRM FDEARARMNG 120 GVTAPKQPET NHSLKS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1jfi_B	5e-29	1	115	21	133	Transcription Regulator NC2 beta chain
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0934s0060.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006374347.1	9e-98	protein Dr1 homolog
Swissprot	P49592	9e-78	NC2B_ARATH; Protein Dr1 homolog
TrEMBL	A0A1L6K5H4	2e-96	A0A1L6K5H4_POPTO; Repressor family protein
TrEMBL	B9N099	2e-96	B9N099_POPTR; Uncharacterized protein
STRING	POPTR_0015s06290.1	3e-97	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G23090.2	7e-73	nuclear factor Y, subunit B13

Link Out ? help Back to Top
Phytozome	SapurV1A.0934s0060.4.p

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]