PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0945s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family M-type_MADS
Protein Properties Length: 169aa    MW: 18846.8 Da    PI: 10.229
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0945s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF82.62.4e-2678127150
                             S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                             krien+  rqvtf+kRr+g+lKKA+ELSvLCdae+ v ifs +gklye +
  SapurV1A.0945s0060.1.p  78 KRIENQVHRQVTFCKRRAGLLKKAKELSVLCDAEIGVFIFSAHGKLYELA 127
                             79*********************************************965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.6E-3570129IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-2770142IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.75870130IPR002100Transcription factor, MADS-box
CDDcd002655.58E-4071141No hitNo description
PRINTSPR004042.3E-277292IPR002100Transcription factor, MADS-box
PfamPF003198.2E-2379125IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-2792107IPR002100Transcription factor, MADS-box
PRINTSPR004042.3E-27107128IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MEANYLYPYG HASRAPSRVE TEFQPNVRKE ESMANHITAT QLKNRLTAFD GVITATLKLV  60
QTSVRLPVEM ARGKVQLKRI ENQVHRQVTF CKRRAGLLKK AKELSVLCDA EIGVFIFSAH  120
GKLYELATRG TMQGLIERYM NSGRGAQPEP AAVETLPDPV RHLITQLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A4e-1670163188MEF2C
5f28_B4e-1670163188MEF2C
5f28_C4e-1670163188MEF2C
5f28_D4e-1670163188MEF2C
6byy_A5e-1670128159MEF2 CHIMERA
6byy_B5e-1670128159MEF2 CHIMERA
6byy_C5e-1670128159MEF2 CHIMERA
6byy_D5e-1670128159MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription activator that regulates root development by controlling cell proliferation in root meristem. May mediate responses to auxin in the root. May act as promoter of the flowering transition through up-regulation of SOC, FT and LFY. {ECO:0000269|PubMed:18203871}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0945s0060.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin in root phloem. {ECO:0000269|PubMed:18203871}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006376144.28e-54agamous-like MADS-box protein AGL12 isoform X1
RefseqXP_011031550.19e-54PREDICTED: agamous-like MADS-box protein AGL12
RefseqXP_024439180.16e-54agamous-like MADS-box protein AGL12 isoform X2
SwissprotQ388414e-38AGL12_ARATH; Agamous-like MADS-box protein AGL12
TrEMBLA0A3N7FWA44e-53A0A3N7FWA4_POPTR; Uncharacterized protein
STRINGPOPTR_0019s10540.12e-52(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF75663144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.12e-40AGAMOUS-like 12
Publications ? help Back to Top
  1. Zimmermann P,Hirsch-Hoffmann M,Hennig L,Gruissem W
    GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox.
    Plant Physiol., 2004. 136(1): p. 2621-32
    [PMID:15375207]
  2. Pacheco-Escobedo MA, et al.
    Longitudinal zonation pattern in Arabidopsis root tip defined by a multiple structural change algorithm.
    Ann. Bot., 2018.
    [PMID:27358290]
  3. García-Cruz KV, et al.
    The MADS-box XAANTAL1 increases proliferation at the Arabidopsis root stem-cell niche and participates in transition to differentiation by regulating cell-cycle components.
    Ann. Bot., 2018.
    [PMID:27474508]