PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0945s0100.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 26143.9 Da    PI: 9.7885
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0945s0100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-311463150
                            S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                  SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                            krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  SapurV1A.0945s0100.1.p 14 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 63
                            79***********************************************8 PP
2K-box106.63e-35841795100
                   K-box   5 sgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeen 91 
                             + +s +e +a+++qqe+akL+++i++Lq+++Rhl+G+ +++Ls+keL+qLe++Le+++++iRskK+elll++ie+lqk+e el++e 
  SapurV1A.0945s0100.1.p  84 NASSITEINAQYYQQESAKLRQQIQMLQNSNRHLMGDAVSNLSVKELKQLENRLERGITRIRSKKHELLLSEIEYLQKREIELENES 170
                             44558999******************************************************************************* PP

                   K-box  92 kaLrkklee 100
                              +Lr+k++e
  SapurV1A.0945s0100.1.p 171 VCLRTKIAE 179
                             ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-42665IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.16666IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.24E-32780IPR002100Transcription factor, MADS-box
CDDcd002651.29E-42784No hitNo description
PROSITE patternPS003500862IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-33828IPR002100Transcription factor, MADS-box
PfamPF003198.2E-271562IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-332843IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-334364IPR002100Transcription factor, MADS-box
PfamPF014863.7E-2692177IPR002487Transcription factor, K-box
PROSITE profilePS5129715.35193183IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048481Biological Processplant ovule development
GO:0080155Biological Processregulation of double fertilization forming a zygote and endosperm
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MTCKEMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL IVFSSRGRLY  60
EYANNNSIRS TIDRYKKASS DGSNASSITE INAQYYQQES AKLRQQIQML QNSNRHLMGD  120
AVSNLSVKEL KQLENRLERG ITRIRSKKHE LLLSEIEYLQ KREIELENES VCLRTKIAEV  180
ERLQQADMVT GAELKAIQAL AASRNFFAPH LLEGGAAYPH NDKKILHLG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-21669164Myocyte-specific enhancer factor 2B
1tqe_Q8e-21669164Myocyte-specific enhancer factor 2B
1tqe_R8e-21669164Myocyte-specific enhancer factor 2B
1tqe_S8e-21669164Myocyte-specific enhancer factor 2B
6c9l_A8e-21669164Myocyte-specific enhancer factor 2B
6c9l_B8e-21669164Myocyte-specific enhancer factor 2B
6c9l_C8e-21669164Myocyte-specific enhancer factor 2B
6c9l_D8e-21669164Myocyte-specific enhancer factor 2B
6c9l_E8e-21669164Myocyte-specific enhancer factor 2B
6c9l_F8e-21669164Myocyte-specific enhancer factor 2B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in seed development (PubMed:21447172, Ref.1, PubMed:29853599). Plays a role in seed morphogenesis by promoting the correct development of endotesta cell layer, which directs the further development of the seed coat, the endosperm, and consequently the embryo (Ref.1, PubMed:29853599). {ECO:0000269|PubMed:21447172, ECO:0000269|PubMed:29853599, ECO:0000269|Ref.1}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0945s0100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447126.11e-153agamous-like MADS-box protein AGL11 isoform X2
SwissprotF6I4571e-134AG11C_VITVI; Agamous-like MADS-box protein AGL11
TrEMBLU5FIJ51e-150U5FIJ5_POPTR; Uncharacterized protein
STRINGcassava4.1_021818m1e-143(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68429102
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G09960.11e-116MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Mejía N, et al.
    Molecular, genetic and transcriptional evidence for a role of VvAGL11 in stenospermocarpic seedlessness in grapevine.
    BMC Plant Biol., 2011. 11: p. 57
    [PMID:21447172]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]
  5. Malabarba J, et al.
    The MADS-box gene Agamous-like 11 is essential for seed morphogenesis in grapevine.
    J. Exp. Bot., 2017. 68(7): p. 1493-1506
    [PMID:28369525]
  6. Royo C, et al.
    The Major Origin of Seedless Grapes Is Associated with a Missense Mutation in the MADS-Box Gene VviAGL11.
    Plant Physiol., 2018. 177(3): p. 1234-1253
    [PMID:29853599]