PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0961s0160.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family BES1
Protein Properties Length: 678aa    MW: 76223.5 Da    PI: 6.3167
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0961s0160.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822139.82.6e-43762002134
                  DUF822   2 gsgrkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpleeaeaagssasa 88 
                             g+g+++++kE+E++k+RER+RRai+++++aGLR++G+++lp+raD+n+Vl+AL+reAGw+ve+DGtt+r++  p     ++gs+  +
  SapurV1A.0961s0160.1.p  76 GKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGDFPLPARADMNDVLAALAREAGWTVEADGTTFRQSPPPS----HTGSFGVR 158
                             899******************************************************************776555....88998888 PP

                  DUF822  89 spesslqsslkssalaspvesysaspksssfpspssldsislasa..a 134
                              +es+l    k++a++   e + ++++ ++++sp slds+ +++   +
  SapurV1A.0961s0160.1.p 159 PVESPLL---KNCAVK---ECQPSVLRIDESLSPGSLDSMVISERenS 200
                             8888866...666655...45667788999999999999999877441 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056871.9E-4376213IPR008540BES1/BZR1 plant transcription factor, N-terminal
SuperFamilySSF514452.11E-159236671IPR017853Glycoside hydrolase superfamily
Gene3DG3DSA:3.20.20.802.2E-172238669IPR013781Glycoside hydrolase, catalytic domain
PfamPF013734.7E-86263635IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56276290IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56297315IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56319340IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56412434IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56485504IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56519535IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56536547IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56554577IPR001554Glycoside hydrolase, family 14
PRINTSPR007508.0E-56592614IPR001554Glycoside hydrolase, family 14
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000272Biological Processpolysaccharide catabolic process
GO:0048831Biological Processregulation of shoot system development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0016161Molecular Functionbeta-amylase activity
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MNTNNSNQDL LINPQQTQIS QPDPYSHLPH PVQPGPSPSP HTQTRRPRGF AATAAAAAAA  60
ASADSTPAVS SPSASGKGKR EREKEKERTK LRERHRRAIT SRMLAGLRQY GDFPLPARAD  120
MNDVLAALAR EAGWTVEADG TTFRQSPPPS HTGSFGVRPV ESPLLKNCAV KECQPSVLRI  180
DESLSPGSLD SMVISERENS RNEKYTSASP INSVIECLDA DQLIQDVHSG MHQNDFTENS  240
RVPVYVMLAN GFINNCCHLI DPQGVRQELS HMKSLDVDGV VVECWWGVVE AWSPQKYVWS  300
GYRELFNIIQ EFKLKLQVLM AFHEYGGNDS GDVLISLPQW VLEIGKDNQD IFFTDREGRR  360
NTECLSWGID KERVLKGRTG IEVYFDFMRS FRTEFNDLFT EGLITAIEIG LGPSGELKYP  420
SFSERLGWRY PGIGEFQCYD KYSQQNLRKA AKLRGHSFWA KGPDNAGQYN SRPHETGFFC  480
ERGDYDSYFG RFFLHWYSQS LIDHADNVLS LASFAFEDTK IIVKVPAVYW WYRTASHAAE  540
LTAGYYNPTN QDGYSPVFEV LKKHSVIVKF VCSGLHVSGF ENDEALVDPE GLSWQVLNSA  600
WDRGLTVAGV NMLACYDRDG YRRVVEMAKP RNDPDHHRFS FFVYQQPSAL SHGTICFPEL  660
DYFIKCMHGG ITGDLVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wdq_A1e-12324263112401Beta-amylase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00543DAPTransfer from AT5G45300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0961s0160.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002304400.20.0beta-amylase 8 isoform X2
SwissprotQ9FH800.0BAM8_ARATH; Beta-amylase 8
TrEMBLA0A2K2B4Z10.0A0A2K2B4Z1_POPTR; Beta-amylase
STRINGPOPTR_0003s10570.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF119023032
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45300.10.0beta-amylase 2
Publications ? help Back to Top
  1. Soyk S, et al.
    The Enzyme-Like Domain of Arabidopsis Nuclear β-Amylases Is Critical for DNA Sequence Recognition and Transcriptional Activation.
    Plant Cell, 2014. 26(4): p. 1746-1763
    [PMID:24748042]