PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0978s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB_related
Protein Properties Length: 79aa    MW: 8921.97 Da    PI: 9.5786
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0978s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.14.7e-09851344
                            SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
         Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                            +WT+   +l+ +a +++ ++   +W+ +ar +g g++++++k ++
  SapurV1A.0978s0070.1.p  8 SWTPKQNKLFEKALALYDKDtpdRWHNVARAVG-GKSAEEVKWHY 51
                            6********************************.********998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.771459IPR017884SANT domain
SMARTSM007178.4E-7557IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.0E-4761IPR009057Homeodomain-like
PfamPF002499.0E-7851IPR001005SANT/Myb domain
SuperFamilySSF466899.36E-13863IPR009057Homeodomain-like
CDDcd001676.42E-6851No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 79 aa     Download sequence    Send to blast
MSSNSLTSWT PKQNKLFEKA LALYDKDTPD RWHNVARAVG GKSAEEVKWH YEILIKDVRE  60
IESGRVPFPN YRSSGNGN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-329751177RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0978s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002310812.15e-50protein RADIALIS-like 3
SwissprotQ6NNN06e-36RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLB9HF151e-48B9HF15_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13000.12e-49(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15434280
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.21e-35RAD-like 6