PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0979s0060.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family B3
Protein Properties Length: 202aa    MW: 22462 Da    PI: 10.1118
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0979s0060.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B363.24e-20100193298
                             EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE- CS
                      B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld 85 
                             fkv++++++  +++l++p  fa++h  gg    +  ++le ++gr W v++   ++  + ++ltkGW++Fv +n+L egD+++F+l+
  SapurV1A.0979s0060.1.p 100 FKVTLQAYNIHKHLLYVPHGFARRHllGG----PAIIKLEVSNGRYWPVQI--LQHEHQlVTLTKGWSQFVGENDLVEGDVCTFELV 180
                             68999********************7654....457***************..5555555*************************99 PP

                             SSSEE..EEEEE- CS
                      B3  86 grsefelvvkvfr 98 
                             + ++  l+v+v r
  SapurV1A.0979s0060.1.p 181 KGNGCVLKVTVSR 193
                             7665557777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-2392193IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.32E-2393192IPR015300DNA-binding pseudobarrel domain
CDDcd100171.42E-1898193No hitNo description
PROSITE profilePS5086313.47999194IPR003340B3 DNA binding domain
SMARTSM010193.6E-1699195IPR003340B3 DNA binding domain
PfamPF023623.3E-18100191IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MEIRGRVIFC AAAFVGKYLR GVSHCKLQAY DAREWPIRII SHGSKLLKGR IASCKENGLK  60
EGDDGFEDVR IVAGIPARAF TERSRVLRSA KKLEPESPSF KVTLQAYNIH KHLLYVPHGF  120
ARRHLLGGPA IIKLEVSNGR YWPVQILQHE HQLVTLTKGW SQFVGENDLV EGDVCTFELV  180
KGNGCVLKVT VSRDGSRPSK S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A5e-218219331141B3 domain-containing transcription factor VRN1
4i1k_B5e-218219331141B3 domain-containing transcription factor VRN1
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0979s0060.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49480.12e-22related to vernalization1 1