PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0987s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LSD

Protein Properties

Length: 170aa MW: 17498.5 Da PI: 7.7213

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0987s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	41.9	1.6e-13	39	63	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V SapurV1A.0987s0050.1.p 39 CSGCRNLLLYPVGATSVCCAVCNAV 63 ************************9 PP
2	zf-LSD1	44	3.7e-14	78	102	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV SapurV1A.0987s0050.1.p 78 CVGCHTLLMYIRGATSVQCSCCHTV 102 ************************9 PP
3	zf-LSD1	41.5	2.2e-13	129	153	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V SapurV1A.0987s0050.1.p 129 CGSCRMLLMYQYGARSVKCAVCNFV 153 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.3E-12	36	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.8E-10	39	63	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	1.95E-5	39	150	IPR011031	Multihaem cytochrome
TIGRFAMs	TIGR01053	1.3E-13	75	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.1E-11	78	102	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.5E-13	126	154	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.9E-12	129	153	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 170 aa Download sequence Send to blast
MPVPLAPYPT PPAPYAPPAP APAPAPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC 60 NAVTAVPPPG TEMAQLVCVG CHTLLMYIRG ATSVQCSCCH TVNLALEGKE PENLLLFNHS 120 ANQVAHVNCG SCRMLLMYQY GARSVKCAVC NFVTPVGVSS SIHSSFISC*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0987s0050.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU232247	6e-49	CU232247.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593714.1	4e-80	protein LOL1
Refseq	XP_021593716.1	4e-80	protein LOL1
Refseq	XP_021593717.1	4e-80	protein LOL1
Refseq	XP_021593718.1	4e-80	protein LOL1
Swissprot	Q93ZB1	5e-71	LOL1_ARATH; Protein LOL1
TrEMBL	A0A2G5CN89	8e-81	A0A2G5CN89_AQUCA; Uncharacterized protein
STRING	Aquca_044_00148.1	1e-81	(Aquilegia coerulea)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8187	33	46

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	8e-55	lsd one like 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0987s0050.1.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]