PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.0987s0050.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

LSD

Protein Properties

Length: 158aa MW: 16219 Da PI: 8.0698

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.0987s0050.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	42.1	1.4e-13	39	63	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr+lL YP GA+sV+Ca+C++V SapurV1A.0987s0050.2.p 39 CSGCRNLLLYPVGATSVCCAVCNAV 63 ************************9 PP
2	zf-LSD1	44.1	3.3e-14	78	102	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C gC+tlL+Y rGA+sV+C++C+tV SapurV1A.0987s0050.2.p 78 CVGCHTLLMYIRGATSVQCSCCHTV 102 ************************9 PP
3	zf-LSD1	41.6	2e-13	116	140	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+Y +GA+sV+Ca+C++V SapurV1A.0987s0050.2.p 116 CGSCRMLLMYQYGARSVKCAVCNFV 140 ***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.1E-12	36	66	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.6E-10	39	63	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	1.4E-5	39	137	IPR011031	Multihaem cytochrome
Gene3D	G3DSA:3.90.10.10	7.8E-4	53	137	No hit	No description
TIGRFAMs	TIGR01053	1.2E-13	75	104	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	1.9E-11	78	102	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	3.1E-13	113	141	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	2.6E-12	116	140	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 158 aa Download sequence Send to blast
MPVPLAPYPT PPAPYAPPAP APAPAPPPPA NGAQSQLVCS GCRNLLLYPV GATSVCCAVC 60 NAVTAVPPPG TEMAQLVCVG CHTLLMYIRG ATSVQCSCCH TVNLALEANQ VAHVNCGSCR 120 MLLMYQYGAR SVKCAVCNFV TPVGQVSSSG NERKFNT*

Functional Description ? help Back to Top
Source	Description
UniProt	Positive regulator of reactive oxygen-induced cell death. May be involved in the repression of the copper/zinc superoxide dismutase CSD1 and CSD2 that detoxify accumulating superoxide before the reactive oxygen species (ROS) can trigger a cell death cascade. LSD1 and LOL1 have antagonistic effects on CSD1 and CSD2 accumulation to regulate oxidative stress-induced cell death. {ECO:0000269\|PubMed:12732715}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.0987s0050.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CU232247	4e-99	CU232247.1 Populus EST from mild drought-stressed leaves.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021593714.1	1e-85	protein LOL1
Refseq	XP_021593716.1	1e-85	protein LOL1
Refseq	XP_021593717.1	1e-85	protein LOL1
Refseq	XP_021593718.1	1e-85	protein LOL1
Swissprot	Q93ZB1	6e-76	LOL1_ARATH; Protein LOL1
TrEMBL	A0A2C9UHS8	2e-84	A0A2C9UHS8_MANES; Uncharacterized protein
TrEMBL	A0A2G5CPJ2	2e-84	A0A2G5CPJ2_AQUCA; Uncharacterized protein
STRING	cassava4.1_018557m	4e-85	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32540.3	2e-61	lsd one like 1

Link Out ? help Back to Top
Phytozome	SapurV1A.0987s0050.2.p

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]