PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0998s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family FAR1
Protein Properties Length: 888aa    MW: 101897 Da    PI: 6.8336
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0998s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR173.83.8e-23184270190
                    FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnH 87 
                             kfY+ YA+++GF++rk k ++   ng i kr f Csk+g+r +++ + + ++ +r+etrtgC+ak++ + e +gkw+v+++++eHnH
  SapurV1A.0998s0010.1.p 184 KFYEGYANKIGFRTRKGKVQRL-SNGAIRKRFFFCSKQGFRLKKQAD-KITKYKRKETRTGCDAKIQFTVE-NGKWVVSQFNQEHNH 267
                             6*****************9998.8899****************9999.99999*****************9.*************** PP

                    FAR1  88 ela 90 
                             +l 
  SapurV1A.0998s0010.1.p 268 HLE 270
                             996 PP
2Myb_DNA-binding51.13.1e-16803845145
                             TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
         Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                             rg+ T+eE++l+++++ ++G++ W++Ia++++ gRt++++k++w 
  SapurV1A.0998s0010.1.p 803 RGNLTPEEQLLILELHSKWGNR-WSKIAQHLP-GRTDNEIKNYWI 845
                             7999******************.*********.***********6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.9E-20184270IPR004330FAR1 DNA binding domain
PfamPF105511.4E-21379473IPR018289MULE transposase domain
PROSITE profilePS509669.483653691IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-5665691IPR007527Zinc finger, SWIM-type
SMARTSM005752.5E-6666693IPR006564Zinc finger, PMZ-type
SuperFamilySSF466894.19E-21783854IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.8E-10783809IPR009057Homeodomain-like
PROSITE profilePS500904.356784797IPR017877Myb-like domain
PROSITE profilePS5129425.687798852IPR017930Myb domain
SMARTSM007172.9E-15802850IPR001005SANT/Myb domain
PfamPF002494.8E-15803845IPR001005SANT/Myb domain
CDDcd001671.81E-10807846No hitNo description
Gene3DG3DSA:1.10.10.601.1E-19810847IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 888 aa     Download sequence    Send to blast
MAETSDSAAG NDPQTSYIDQ DAAQGSSDSF LHNVYSRNQD KASTSEWGDS GNGLEFAFGS  60
SVKGAGVSSL DYEWGHVFEN SSNKKRKKKN TDVSSSDLSA ALSQISKDLS LSSSSSSGEI  120
DEDRENEEAD LLKSHDENLL AEYLWYGDED EIQATSVFGA SESKDSCQKP EIGMEFSSEE  180
EAYKFYEGYA NKIGFRTRKG KVQRLSNGAI RKRFFFCSKQ GFRLKKQADK ITKYKRKETR  240
TGCDAKIQFT VENGKWVVSQ FNQEHNHHLE NQRHITRSCT ETSEACLILT ENNAEMAKDA  300
GTPKSTELCN MVCSTSVHDK TRDGKHPEEV QNLLNYLRHL QVEDLSFFYA VQLDSNNRLK  360
NLFWRDGRSM VDYDYFGDVL ILDTTLRMDK YDMICAPFWG LNHHRQYVMF GCAFLLDESK  420
ESFVWLLETF MEAMGRKHPK IIVTDENQVM VEAVKVVLLD AEHQFGAWFI RRNALKHVFV  480
FYSQPAFESI FNACISDCQT EEEFESKWDF LLKKFNLREN AWLNNLYLSR ERWANVFHKG  540
TFSAGIKWCK DIINVFQNST GDTTNMSMFV HQYLKVVETQ RLEELYEDLR CGETTKVLIL  600
IGSAMEKQAA NIYTRTIFSI FQGELVKSLS VAIEEIGGDG TNATFKLTEE GQKESIVEFS  660
CLDSNLACSC KKYESEGILC VHALKVLNAR NIFDIPAQYI LKRWTICAKD SVAEDEHGQK  720
LADQKQQPMI FLLKKTLDVI YKTSAFEDCQ KIAMHYLDKA SKRVEVVLRA KTTDHFKSRK  780
GLRRTGKSCR LRWLNYLKPD VKRGNLTPEE QLLILELHSK WGNRWSKIAQ HLPGRTDNEI  840
KNYWITRVQK RARLLRIDAN STAFQGIIRC LWMPRLLEYV IESNLLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-1775885113107B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18387KKRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0998s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443203.10.0protein FAR1-RELATED SEQUENCE 5
TrEMBLA0A2K1XBC70.0A0A2K1XBC7_POPTR; Uncharacterized protein
STRINGPOPTR_0149s00230.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF4030530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-108FAR1-related sequence 5