PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.0999s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family C3H
Protein Properties Length: 678aa    MW: 73949.7 Da    PI: 7.8293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.0999s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.64.4e-08265285526
                             --SGGGGTS--TTTTT-SS-SS CS
                 zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                             +C+ f++ GtC+ Gd+C +aHg
  SapurV1A.0999s0030.1.p 265 PCPEFRK-GTCQKGDSCEYAHG 285
                             8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.25.40.203.5E-1556183IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.66E-1374159IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.68176184IPR020683Ankyrin repeat-containing domain
SMARTSM002487.4E-476106IPR002110Ankyrin repeat
PROSITE profilePS500888.54976100IPR002110Ankyrin repeat
PfamPF127968.0E-976145IPR020683Ankyrin repeat-containing domain
CDDcd002042.00E-1378174No hitNo description
SMARTSM002480.042111143IPR002110Ankyrin repeat
PROSITE profilePS500889.404111146IPR002110Ankyrin repeat
SMARTSM003562.1E-5260286IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.666260287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.6E-5265287IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-5265285IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869295319IPR000571Zinc finger, CCCH-type
SMARTSM0035637295318IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MCKGSKGDSL SSNPIMEDKS YSQKDNLLYK CSVLLELSAS DDLAGFKIEV EQKGLDIDGA  60
NCWYCRRIGS KKMGFEERTP LMIAAMFGST HVLKYIIETG KVNVNRVCGS DKVTALHCAV  120
AGCAVSSVGI VKLLLDASAD PNSADAKGNI PGDLFATSSK YMCNSRKKLI KLLLNGQNIE  180
DEEEKLIIMP QLAKEGAEKK EYPLDVTLPD INNGIYGTDE FRMYSFKVKP CSRAYSHDWT  240
ECPFVHPGEN ARRRDPKKYP YSCVPCPEFR KGTCQKGDSC EYAHGVFESW LHPAQYRTRL  300
CKDETGCARK VCFFAHKPEE LRPVYASTGS AMPSPRSTSS AMDMTTLSPL ALGSSPLPMP  360
ATSTPPMSPL AVASSSPKSG GLWQNKVSQT PPALQLPGSR LKTAFSARDF NVEMELLGLE  420
SYSNQLQQQQ QQLRDEMSCL SSPSHWSNRI ADLKPTNLDD VFGSLDSSLM SPRQGVSLNA  480
SIQTQLQSPN GLQIRQNMNQ LRSSYPASNL SSSPARNPIS YGFDTSAAVA AAVMNSRSSA  540
FAKRSQSFVD RGAVPNHLGL NAAANSVSMM PSNLPDWSFP NGKLDWGIQG DELNKLKKSA  600
SFGFRSNNNP AATTAASVTA SHEEPDVSWV NSLVKDVPPA GSTFFGPEKQ YSLGRGARES  660
LPPWMEQIYM EQEQMVA*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.0999s0030.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006379630.10.0zinc finger CCCH domain-containing protein 29
SwissprotQ9XEE60.0C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLU5G7L70.0U5G7L7_POPTR; Uncharacterized protein
STRINGPOPTR_0008s06940.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17963490
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.20.0C3H family protein