PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1023s0070.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 225aa    MW: 25140.5 Da    PI: 5.1901
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1023s0070.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.5e-102474355
                            HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                     HLH  3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                            +  + +E++RR+++++ +++L +llP  +    ++ l   +   +A+ YIksL+
  SapurV1A.1023s0070.1.p 24 TERKVIEKNRRNQMKTLYSKLNSLLPDqN---FKEPLPLPDQIDEAISYIKSLE 74
                            56789**********************55...8999****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-102190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3382173IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-92390IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.70E-62377No hitNo description
PfamPF000101.3E-62574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00462779IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MVENLRGSTM ESSSTRSNIS STKTERKVIE KNRRNQMKTL YSKLNSLLPD QNFKEPLPLP  60
DQIDEAISYI KSLEERLMRA RERKEGLTSS RKRSFACTHQ DPTPAATQKS PQLKIQELGS  120
ALEIVLTTGP DNQFLFCEII RILDEEGAEV VSANVHVLGD SIFQVLHAQM KVSDNGFGAA  180
KVTERVNMLI NGSTGEVELD SKLWDFEIHP EIDGDLFTGL VFQT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1023s0070.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011037352.11e-125PREDICTED: transcription factor bHLH118-like
TrEMBLA0A3N7FWG91e-113A0A3N7FWG9_POPTR; Uncharacterized protein
STRINGPOPTR_0013s13340.11e-114(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.18e-40bHLH family protein