PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1034s0070.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

NF-YB

Protein Properties

Length: 139aa MW: 15324.5 Da PI: 9.542

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1034s0070.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	46.8	7.3e-15	10	106	5	95
NF-YB 5 drflPianvsrimkkvl....Pana..kiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkv 85 ++lP a v r++k +l P+++ i kda e + fi ++t+ a+d c++ kr+t+n+ d++ al ++ f ++v plkv SapurV1A.1034s0070.1.p 10 AEELPKAIVRRVVKDTLsrcsPEDSdiNIHKDALLAFSESARIFIHYLTATANDICKESKRQTMNAGDVFKALEDIEFPEFVGPLKV 96 5789*******988855446555226789**************************************************** PP NF-YB 86 ylkkyreleg 95 l+ ++ +g SapurV1A.1034s0070.1.p 97 SLNDFKRKNG 106 *9987766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-31	7	126	IPR009072	Histone-fold
Pfam	PF00808	4.0E-9	12	82	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	9.95E-25	13	121	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 139 aa Download sequence Send to blast
METGKVVAEA EELPKAIVRR VVKDTLSRCS PEDSDINIHK DALLAFSESA RIFIHYLTAT 60 ANDICKESKR QTMNAGDVFK ALEDIEFPEF VGPLKVSLND FKRKNGGKKE GSSPNKEVQK 120 KRKTEGKSTP KKGDTGEK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	101	122	KRKNGGKKEGSSPNKEVQKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1034s0070.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF146061	1e-162	EF146061.1 Populus trichocarpa clone WS0115_E10 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002312821.1	1e-85	DNA polymerase epsilon subunit 3
TrEMBL	A9PCR2	3e-84	A9PCR2_POPTR; Uncharacterized protein
STRING	POPTR_0009s16500.1	6e-85	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11863	32	36

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	6e-45	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	SapurV1A.1034s0070.1.p