PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1044s0090.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

bHLH

Protein Properties

Length: 269aa MW: 28479.7 Da PI: 8.8142

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1044s0090.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12.1	0.00037	163	197	16	55
HHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 16 iNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++ L++l+ + +K + a++L +A+ YI+ Lq SapurV1A.1044s0090.1.p 163 AGDRITSLQQLVSPF-----GKTDTASVLHEATGYIRFLQ 197 558899999999998.....8******************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	10.379	147	196	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0094	153	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	4.45E-10	156	208	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.9E-7	160	202	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 269 aa Download sequence Send to blast
MSESESFLEG NHLVAGGSPP SLSELFFSND GNEVGAAGDM AHALRFSSTG KSPRMLCFGG 60 HTYHNASHEI VMFSAEATKT TPQIPGVTCS DSSSASPGNN STVNEISTIS KSNRKRSGSS 120 QEVTVKSTKT IAKSNLPSQR TSKKTKTENP RTPGNAKIKR EKAGDRITSL QQLVSPFGKT 180 DTASVLHEAT GYIRFLQDQV KVLCSPYLQN LPESGEIGGK EPIKNLCSRG LCLVPVGCTS 240 HLASSNGADF WSPVPMGNNY SSFSSSQQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1044s0090.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024464510.1	1e-148	transcription factor bHLH113
TrEMBL	B9HS72	1e-147	B9HS72_POPTR; Uncharacterized protein
STRING	POPTR_0009s09730.1	1e-143	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10321	21	29

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19500.1	3e-46	bHLH family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1044s0090.1.p