PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1044s0210.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family HB-PHD
Protein Properties Length: 893aa    MW: 97860.2 Da    PI: 4.6903
Description HB-PHD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1044s0210.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox35.51.7e-118288701052
                             HHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHH CS
                Homeobox  10 eqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrR 52 
                               +++L ++F++n+yp++++++ LA++lg+  +qV  WF N R
  SapurV1A.1044s0210.1.p 828 AVTQRLYSYFKENQYPDRAAKASLAEELGIMSEQVNRWFVNAR 870
                             56899************************************99 PP
2PHD39.11.7e-13464519151
                             SBTTTSS..TCTTSSEEEBSS.SSSEEETTTSTSSSSHHSHHSS..TBSSHHHHTT CS
                     PHD   1 rCkvCgk..sdeegelvlCdg.CkewfHlkClglkleseekpeg..ewlCeeCkek 51 
                             +C+ Cg+   +++++++lCdg C++ fH+ Cl ++l +e++p g   wlC+ C++k
  SapurV1A.1044s0210.1.p 464 FCAKCGSkdLNADNDIILCDGaCDRGFHQFCLIPPLLREDIPPGdeGWLCPGCDCK 519
                             699***987778********66********************9999*******985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579039.97E-14454522IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.108.7E-13460519IPR013083Zinc finger, RING/FYVE/PHD-type
PROSITE profilePS5001610.95462519IPR019787Zinc finger, PHD-finger
PfamPF006284.5E-11464519IPR019787Zinc finger, PHD-finger
SMARTSM002491.4E-9464517IPR001965Zinc finger, PHD-type
CDDcd155041.63E-27464516No hitNo description
PROSITE patternPS013590465516IPR019786Zinc finger, PHD-type, conserved site
Gene3DG3DSA:1.10.10.604.2E-11813870IPR009057Homeodomain-like
SMARTSM003894.7E-8818880IPR001356Homeobox domain
SuperFamilySSF466891.5E-10825876IPR009057Homeodomain-like
PfamPF000465.4E-9828871IPR001356Homeobox domain
CDDcd000862.38E-9830870No hitNo description
PROSITE profilePS5007111.985833876IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 893 aa     Download sequence    Send to blast
MSEAENMGVS PSQVSSHTKS YSCPAQTKLE NTHEFTAEYN CGEYSEENPK FESEIIQTEA  60
TNNGATVLQS GARETVERST EDVTNNSLTD LDPPPEGARG APFDEISRPI LTAIDQKLEP  120
GDTHCESSKP IDSGTLQEPI NTNAAPSSCI ASETSQISLE DLASNSCAED VGLPHGDANK  180
GNQIDKSSYP QQTRSAHALE LLSNGACHEP SEERQKPGSE LSENESMGIG TELHSGTAIK  240
NSELLTQLVT KSSPVKHVGL LPGDNIIIPA NEQTRPNHDD EDKGPDHEHL ETPSRVVIIA  300
RRGRPRGKSA SKLSRKKYML RSLRSSDRVL RSRSQGNPKA PESSNNLGNV NSIGDKKGKR  360
RKKRRGKNIV ADEYSKIKAH LRYLLNRMSY EQSLITAYSG EGWKGLSLEK LKPEKELQRA  420
TSEIIRRKVK IRDLFQHIDL LCSEGRFPAS LFDSEGQIDS EDIFCAKCGS KDLNADNDII  480
LCDGACDRGF HQFCLIPPLL REDIPPGDEG WLCPGCDCKV DCIDLLNDSQ GTNISISDCW  540
EKVFPEAAAA ASGQKLDHNF GPSSDDSDDN DYNPDGPDID KKSQEEESSS DESDFTSASE  600
EFKPPPDGKE YMGLSSDDSE DDEYDPDAPV LEEKLKQESS SSDFTSDSED LAAIINSDGL  660
SLEDECHMPT EARGVSNGRK FKSNGKKMQS LNSEILSMLE PDLCRDESAT VSGKRNVDRL  720
DYKKLYDETY GNISTSSDDD YSDTVAPSKR RKNNGDVVTV TANGDASVTE NMNQELKENK  780
HNPDRGTCQN SIFQATNSSP AKTYVGASLS GSSGKSVRSS TYKKLGEAVT QRLYSYFKEN  840
QYPDRAAKAS LAEELGIMSE QVNRWFVNAR WSFNRSSSTG TSKAESASGR KR*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1303316RPRGKSASKLSRKK
2355363KKGKRRKKR
3358364KRRKKRR
4360367RKKRRGKN
5361366KKRRGK
Functional Description ? help Back to Top
Source Description
UniProtBinds only to large DNA fragments. Recognizes a DNA fragment carrying 8 copies of box7 motif of the light-induced cab-E promoter of Nicotiana plumbaginifolia. Also recognizes the box7m1 motif.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1044s0210.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2337710.0CU233771.1 Populus EST from severe drought-stressed opposite wood.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024464583.10.0homeobox protein HAT3.1
RefseqXP_024464584.10.0homeobox protein HAT3.1
RefseqXP_024464585.10.0homeobox protein HAT3.1
SwissprotQ049961e-138HAT31_ARATH; Homeobox protein HAT3.1
TrEMBLA0A2K1Z5B70.0A0A2K1Z5B7_POPTR; Uncharacterized protein
STRINGPOPTR_0009s09600.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84373141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19510.12e-89Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain
Publications ? help Back to Top
  1. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]