PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1048s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family MYB
Protein Properties Length: 372aa    MW: 41632.2 Da    PI: 6.1869
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1048s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.53.1e-181461148
                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                            rg WT+eEd +++ +v  +G+g+W++++++ g++R++k+c++rw +yl
  SapurV1A.1048s0030.1.p 14 RGLWTPEEDAKILAYVSNHGTGNWTLVPKKAGLNRCGKSCRLRWTNYL 61
                            788*******************************************97 PP
2Myb_DNA-binding49.21.3e-1568110246
                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                             +r+ +eE+el++++++  G++ W++Ia++++ gRt++++k++w++
  SapurV1A.1048s0030.1.p  68 DRFAPEEEELIIKLHEAIGSR-WSLIAKRLP-GRTDNDVKNYWNT 110
                             5899*****************.*********.***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-24563IPR009057Homeodomain-like
PROSITE profilePS5129427.17965IPR017930Myb domain
SuperFamilySSF466891.76E-3011108IPR009057Homeodomain-like
SMARTSM007179.1E-151363IPR001005SANT/Myb domain
PfamPF002495.5E-171461IPR001005SANT/Myb domain
CDDcd001673.67E-111761No hitNo description
Gene3DG3DSA:1.10.10.603.8E-2464116IPR009057Homeodomain-like
SMARTSM007171.9E-1466114IPR001005SANT/Myb domain
PROSITE profilePS5129419.10166116IPR017930Myb domain
PfamPF002495.1E-1469110IPR001005SANT/Myb domain
CDDcd001677.39E-1172112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048658Biological Processanther wall tapetum development
GO:0052545Biological Processcallose localization
GO:0055046Biological Processmicrogametogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MGRPPCCDKS NVKRGLWTPE EDAKILAYVS NHGTGNWTLV PKKAGLNRCG KSCRLRWTNY  60
LRPELKHDRF APEEEELIIK LHEAIGSRWS LIAKRLPGRT DNDVKNYWNT KLRKKLQKMG  120
IDPVTHKPFS QIFSDFGNIS GISNTGNLNK SSNTSLMSEP DHRFSSSILT ATEISCFKKT  180
MHEQVQEYNS TVTHPTSWDF LAQFPVHDTE KLPLFFNEDS SSCPSSSSSS STSTFTQSYS  240
CQKSQAPLIS PTCTFTWSEF LLSDPVFSTE FHHQEERSDF DEMLSPTISS TMAMAQNDLS  300
SCNITSTGSN DRSVCDHGTV GNELEENNNA AAADHAAYSS SASSFVDGIL DKDRELHSRF  360
PQLLDPSFDY Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-29141167108B-MYB
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1048s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011008372.10.0PREDICTED: myb-related protein 330
TrEMBLA0A2K1X4M10.0A0A2K1X4M1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11140.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29423474
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28470.12e-89MYB family protein