PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1064s0010.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family WRKY
Protein Properties Length: 532aa    MW: 57405.7 Da    PI: 8.6222
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1064s0010.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.5e-31295353259
                             --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                    WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                             +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed++++++tYeg+Hnh+
  SapurV1A.1064s0010.1.p 295 SDGCQWRKYGQKMAKGNPCPRAYYRCTMAgGCPVRKQVQRCAEDKTILITTYEGNHNHP 353
                             7****************************9****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.6E-33279355IPR003657WRKY domain
SuperFamilySSF1182901.2E-27287355IPR003657WRKY domain
PROSITE profilePS5081129.998289355IPR003657WRKY domain
SMARTSM007743.0E-36294354IPR003657WRKY domain
PfamPF031061.2E-26296353IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 532 aa     Download sequence    Send to blast
MDKQGRELVF FHSGDFLCQN LGVSDHLNDR SSDHTKPMIE EVDFFSTDRT SKLPGTGQEK  60
KISTIGSSST LVDSSINTGL NLLTSSSGIS KIANVKNPNN NELSLLQGEL VRLHDENKKL  120
RSLLDQITRS YKDLQAQLLM ATHKQFYKMF HCGTCRENTS TLSFFHVGNS PPRTLVKNHV  180
KGELNDTPSS IMSAQHFMDP RPRPPVTLDV NDPSVSDDKT PEVLVSSTNT VETKSQMLGK  240
RASIEDAGLE QTSQSWGSPK SPKLEHEKPD EQIPEVPFRK ARVSVRARSE APLISDGCQW  300
RKYGQKMAKG NPCPRAYYRC TMAGGCPVRK QVQRCAEDKT ILITTYEGNH NHPLPPAATA  360
MASTTSAAAA MLLSGSTTSK EGLSSSSSFY PSFPYASAMA TLSASAPFPT ITLDLTQGPN  420
TTMPFHRTSP SPATFPLPLH GSQQLLGHPM YASPRLPAIP PVQLGQRNAS MVETVTAAIA  480
SDPNFTAALA AAISTFMGTP RSGDGANNAN APGRIPGSPQ LPQSCTTFST N*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21281357176WRKY transcription factor 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00115ampDAPTransfer from AT4G01720Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1064s0010.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1485770.0EF148577.1 Populus trichocarpa x Populus deltoides clone WS0134_F08 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440069.10.0probable WRKY transcription factor 47
TrEMBLA9PJI80.0A9PJI8_9ROSI; Uncharacterized protein
STRINGPOPTR_0014s10750.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF104392541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01720.18e-90WRKY family protein