PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1065s0030.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 286aa    MW: 31415.3 Da    PI: 6.2965
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1065s0030.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.32.5e-20127177255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+GVr+++ +g+++AeIrdp   + k +r++lg+f+ta eAaka++ a+ +l+g
  SapurV1A.1065s0030.1.p 127 HYRGVRRRP-WGKYAAEIRDP---NrKGARVWLGTFDTAIEAAKAYDSAAFRLRG 177
                             7********.**********9...6566*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.3E-32126186IPR001471AP2/ERF domain
PfamPF008471.6E-14127177IPR001471AP2/ERF domain
CDDcd000181.98E-31127185No hitNo description
PROSITE profilePS5103224.671127185IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-22127186IPR016177DNA-binding domain
SMARTSM003801.1E-35127191IPR001471AP2/ERF domain
PRINTSPR003672.2E-13128139IPR001471AP2/ERF domain
PRINTSPR003672.2E-13167187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MASFDEASTL ELIRQHLLTD FASIDSFISD LDDLCSTSTT SSTDDYCIKT ESTEFDLFDQ  60
PQFKLQTQSS IESKPQSSPK SSTSLSQRKP SMIKDIAIPP PATLNVTPQV AQPVVNKADM  120
SSEQERHYRG VRRRPWGKYA AEIRDPNRKG ARVWLGTFDT AIEAAKAYDS AAFRLRGSKA  180
ILNFPLEAGK LNSQQPEQLS ETSCKKRKIE GVECCVESTS PIANKVAKRE TSSPESEVKA  240
VASEPLTPSS WKGFWDGEVT GIFSVPPLSP LSPHPSFGYS RLMVV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A1e-29126186161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00556DAPTransfer from AT5G51190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1065s0030.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002299408.11e-163ethylene-responsive transcription factor ERF105
TrEMBLB9GK341e-162B9GK34_POPTR; Uncharacterized protein
STRINGPOPTR_0001s11780.11e-163(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF108534109
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.12e-53ERF family protein