PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1078s0010.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 249aa MW: 28810.2 Da PI: 5.3088

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1078s0010.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	81.4	1.6e-25	75	166	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHn 86 +fY+ Y++++GF++r++++++s ++++i+ r+fvCskeg+r + k ++ ++r++tr gC+a+l++ ++ gkw+++ + +eHn SapurV1A.1078s0010.2.p 75 EFYELYGRRMGFTIRNNRTRRSLKDNSIIGREFVCSKEGFRGGKCPKrENGVFQSRPVTREGCNAMLRIAAKDGGKWVIYGFIKEHN 161 6*************************************987655524666789**************************** PP FAR1 87 Helap 91 H+l+p SapurV1A.1078s0010.2.p 162 HDLNP 166 975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.3E-22	75	166	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 249 aa Download sequence Send to blast
MMASTSGEQF NSNRNYRCWL AETFDDQETA DDELADNLDG NDNIIEQSIQ DFPVGLQPFE 60 PYIGMEFESA EYAREFYELY GRRMGFTIRN NRTRRSLKDN SIIGREFVCS KEGFRGGKCP 120 KRENGVFQSR PVTREGCNAM LRIAAKDGGK WVIYGFIKEH NHDLNPSKIP PRRSHRIAFS 180 EDEKDLKIRE LSTELHREKK KSAAYHKQLQ MVLTYIEEHT QRLSLKAEVV ADKVKELESE 240 EPEDPDCE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1078s0010.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006380293.1	1e-175	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_024460694.1	1e-175	protein FAR1-RELATED SEQUENCE 5
TrEMBL	U5G3X1	1e-174	U5G3X1_POPTR; Uncharacterized protein
STRING	POPTR_0007s01930.1	1e-175	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	3e-47	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1078s0010.2.p