PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1078s0040.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

FAR1

Protein Properties

Length: 253aa MW: 28738.3 Da PI: 5.7305

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1078s0040.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	91.2	1.3e-28	88	174	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fYn+YA+++GF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+r+etr+gC+a++ v+k k+gkw+vtk+++eH+H+ SapurV1A.1078s0040.1.p 88 FYNAYATRTGFVIRVSKLSRSRRDGSAIGRALVCNKEGFRMPDKRE--KIVRQRVETRVGCRAMILVRKIKSGKWVVTKFVKEHTHT 172 ****************************************9988..9************************************ PP FAR1 89 la 90 l+ SapurV1A.1078s0040.1.p 173 LT 174 97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-25	88	174	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 253 aa Download sequence Send to blast
MDFIVDGDAN GDVLGNAVVD IAGAGDETEI FENSVEEEFE QYEDRNMDKE TLAIDTIPDA 60 APAIMSKITA DEPYFGQEFD SEAAAHAFYN AYATRTGFVI RVSKLSRSRR DGSAIGRALV 120 CNKEGFRMPD KREKIVRQRV ETRVGCRAMI LVRKIKSGKW VVTKFVKEHT HTLTTVKGRR 180 DCIYDQYPNE HDKIRELSQQ LAIEKKRAAT YKRNLELIFE QIEEHNESLS KKIQHIVDSV 240 GDMENKEQKS QT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1078s0040.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214628	0.0	AC214628.1 Populus trichocarpa clone POP040-F15, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024460858.1	1e-167	protein FAR1-RELATED SEQUENCE 12 isoform X2
TrEMBL	A0A2K1ZTL4	1e-165	A0A2K1ZTL4_POPTR; Uncharacterized protein
STRING	POPTR_0007s01870.1	1e-165	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2453	30	72

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	6e-94	FAR1 family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1078s0040.1.p