PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1087s0050.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

MYB_related

Protein Properties

Length: 335aa MW: 36078.8 Da PI: 7.1511

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1087s0050.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	38.4	2.8e-12	102	146	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE+ ++ + ++lG+g+W+ Iar Rt+ q+ s+ qky SapurV1A.1087s0050.1.p 102 PWTEEEHRMFLLGLQKLGKGDWRGIARNYVISRTPTQVASHAQKY 146 8***************************89**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.60.10	6.1E-4	3	21	IPR001878	Zinc finger, CCHC-type
PROSITE profile	PS51294	18.883	95	151	IPR017930	Myb domain
SuperFamily	SSF46689	1.57E-16	97	152	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-19	98	149	IPR006447	Myb domain, plants
Gene3D	G3DSA:1.10.10.60	2.9E-11	99	145	IPR009057	Homeodomain-like
SMART	SM00717	8.0E-11	99	149	IPR001005	SANT/Myb domain
CDD	cd00167	2.61E-9	102	147	No hit	No description
Pfam	PF00249	1.1E-10	102	146	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 335 aa Download sequence Send to blast
MTRRCSHCSH NGHNSRTCPN RGVKLFGVRL TDGSIRKSAS MGNLNHYTGS SNMGGPLTSG 60 PNNPVSPGDT PDHGTAGAGA GYASEDFVPG SSSSRERKKG VPWTEEEHRM FLLGLQKLGK 120 GDWRGIARNY VISRTPTQVA SHAQKYFIRH SNVSRRKRRS SLFDIVADEP GDTPMASQDL 180 STIQQESEVQ SENPVPAPPP LDEECESMDS TNSNEGEPLP PNSSQSAYPV VYPAYFSPFF 240 PFSFPFWSGN GEESTKTETH EVLKPTAVHS KSLINVDELV GMSKLSLGES IGQDGTSSLS 300 QKLLEGSPRQ SAFHANPASN SSSMNRSSSP IHAV*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional repressor (PubMed:23888064, PubMed:24806884). Direct regulator of the transcription of peroxidase (Prxs) and reactive oxygen species (ROS)-related genes via the recognition of 5'-ATCACA-3' motif (PubMed:24806884). Binds to 5'-TATCCA-3' motif (TA box) and represses the activity of corresponding promoters (e.g. sugar response genes) (PubMed:25920996). Regulates hypocotyl elongation in response to darkness by enhancing auxin accumulation in a phytochrome-interacting factor (PIF) proteins-dependent manner. Promotes lateral roots formation (PubMed:23888064). Promotes cell expansion during leaves development via the modulation of cell wall-located Prxs (PubMed:24806884). Plays a critical role in developmentally regulated and dark-induced onset of leaf senescence by repressing the transcription of several genes involved in chloroplast function and responses to light and auxin. Promotes responses to auxin, abscisic acid (ABA), and ethylene (PubMed:25920996). {ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1087s0050.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Slightly induced by CdCl(2) (PubMed:16463103). Accumulates in the dark (PubMed:23888064, PubMed:25920996). Diurnal expression pattern with maximal levels in the morning (at protein level). Specifically induced during leaf expansion (PubMed:24806884). Expressed in old and dark-treated leaves (PubMed:25920996). {ECO:0000269\|PubMed:16463103, ECO:0000269\|PubMed:23888064, ECO:0000269\|PubMed:24806884, ECO:0000269\|PubMed:25920996}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011031924.1	0.0	PREDICTED: myb-like protein J isoform X3
Swissprot	Q9LVS0	1e-138	KUA1_ARATH; Transcription factor KUA1
TrEMBL	B9MUR9	0.0	B9MUR9_POPTR; Uncharacterized protein
STRING	POPTR_0001s15510.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7230	31	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G47390.1	1e-122	MYB_related family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1087s0050.1.p

Publications ? help Back to Top
Liu C,Wang B,Li Z,Peng Z,Zhang J TsNAC1 Is a Key Transcription Factor in Abiotic Stress Resistance and Growth. Plant Physiol., 2018. 176(1): p. 742-756 [PMID:29122985]