PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1100s0080.1.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 189aa MW: 21312.2 Da PI: 8.6936

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1100s0080.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	205.3	2.3e-63	9	161	6	170
YABBY 6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesa 92 eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt++ svn+a a q l+ +++++ ++ n + + + s+ SapurV1A.1100s0080.1.p 9 PHEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNIWSVNMAAAFQSLSWQDQVQ------------ASNYNSRDYRTDLGSS 83 579*******************************************99999999733............2233333333334444 PP YABBY 93 stsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 s+ +++ ++++ + v++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl SapurV1A.1100s0080.1.p 84 SNCNKKISMKTPAANIVTQERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 161 44444444555566666666679***************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	9.3E-71	9	161	IPR006780	YABBY protein
SuperFamily	SSF47095	9.03E-8	106	155	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.9E-4	109	155	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MSSFMDVVPH EQLCYIPCNF CNIVLAVSVP CSSLFDIVTV RCGHCTNIWS VNMAAAFQSL 60 SWQDQVQASN YNSRDYRTDL GSSSNCNKKI SMKTPAANIV TQERVVNRPP EKRQRIPSAY 120 NQFIKEEIQR IKANNPDISH REAFSTAAKN WAHFPHIHFG LMLEANKQSK LHDGSEKHLM 180 SRSALLNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1100s0080.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052446	3e-51	BT052446.1 Medicago truncatula clone MTYFD_FE_FF_FG1G-L-9 unknown mRNA.
GenBank	BT133581	3e-51	BT133581.1 Medicago truncatula clone JCVI-FLMt-10H8 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308074.1	1e-127	axial regulator YABBY 5
Swissprot	Q8GW46	2e-86	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9HAJ0	1e-125	B9HAJ0_POPTR; Uncharacterized protein
STRING	POPTR_0006s06700.1	1e-126	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1124	34	112

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	9e-89	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1100s0080.1.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]