PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

SapurV1A.1100s0080.2.p

Organism

Salix purpurea

Taxonomic ID

77065

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix

Family

YABBY

Protein Properties

Length: 137aa MW: 15536.5 Da PI: 10.4172

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
SapurV1A.1100s0080.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	138.5	7.6e-43	11	109	74	170
YABBY 74 elkveeenlksnvekeesasts..vsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaak 158 +++v+ +n++s + +++ s+s +++ ++++ + v++ v+rPPekrqr+Psayn+fikeeiqrika+nPdishreafs+aak SapurV1A.1100s0080.2.p 11 QDQVQASNYNSRDYRTDLGSSSncNKKISMKTPAANIVTQERVVNRPPEKRQRIPSAYNQFIKEEIQRIKANNPDISHREAFSTAAK 97 4455666666666555555555005555556667777888888****************************************** PP YABBY 159 nWahfPkihfgl 170 nWahfP+ihfgl SapurV1A.1100s0080.2.p 98 NWAHFPHIHFGL 109 ********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	4.0E-41	12	109	IPR006780	YABBY protein
SuperFamily	SSF47095	4.45E-8	53	103	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	1.0E-4	57	103	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009944	Biological Process	polarity specification of adaxial/abaxial axis
GO:1902183	Biological Process	regulation of shoot apical meristem development
GO:2000024	Biological Process	regulation of leaf development

Sequence ? help Back to Top
Protein Sequence Length: 137 aa Download sequence Send to blast
MAAAFQSLSW QDQVQASNYN SRDYRTDLGS SSNCNKKISM KTPAANIVTQ ERVVNRPPEK 60 RQRIPSAYNQ FIKEEIQRIK ANNPDISHRE AFSTAAKNWA HFPHIHFGLM LEANKQSKLH 120 DGSEKHLMSR SALLNN*

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269\|PubMed:19837869}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	SapurV1A.1100s0080.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002308074.1	7e-88	axial regulator YABBY 5
Swissprot	Q8GW46	1e-51	YAB5_ARATH; Axial regulator YABBY 5
TrEMBL	B9HAJ0	2e-86	B9HAJ0_POPTR; Uncharacterized protein
STRING	POPTR_0006s06700.1	3e-87	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G26580.2	6e-54	YABBY family protein

Link Out ? help Back to Top
Phytozome	SapurV1A.1100s0080.2.p

Publications ? help Back to Top
Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity. Plant Cell, 2015. 27(12): p. 3321-35 [PMID:26589551]