PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1110s0020.1.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family bHLH
Protein Properties Length: 231aa    MW: 25972.4 Da    PI: 10.0436
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1110s0020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH314.6e-10171217454
                             HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                     HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                             +h+ +Er RR++i s++  L++l+P +    +k   Ka +L + ++Y++sL
  SapurV1A.1110s0020.1.p 171 NHSLAERARRQKISSKMKLLQSLVPGC----DKITGKALVLDEIIRYVQSL 217
                             79************************9....899***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.76E-8165222No hitNo description
SuperFamilySSF474591.57E-13165224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.754167217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.0E-14168223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-7171217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.0E-8173223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 231 aa     Download sequence    Send to blast
MEGFSYQQHH HASVVDEFQH DSNTIKSGTL FSPNLLHECL QVSPLNAERI FETIHDDDNS  60
SAKVPLISTT DHSSTIPRHN SCSFRVADLQ YGEENRDSHE AMTPTWWQLR KHSSPPIKLK  120
RESSGQKLNP GSSVSRNAKR VRPAKKQKKV PVELPAGCVH VRARRGEATD NHSLAERARR  180
QKISSKMKLL QSLVPGCDKI TGKALVLDEI IRYVQSLKDR VQVRIKEDTA *
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1110s0020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011020986.11e-124PREDICTED: transcription factor bHLH137-like
TrEMBLA0A3N7EW881e-117A0A3N7EW88_POPTR; Uncharacterized protein
STRINGPOPTR_0003s16300.11e-125(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16101510
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.26e-31bHLH family protein