PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SapurV1A.1115s0040.2.p
Organism
Salix purpurea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Salix
Family ERF
Protein Properties Length: 333aa    MW: 36480.1 Da    PI: 4.841
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SapurV1A.1115s0040.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.6e-1971120255
                     AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                             +y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a++  +++++g
  SapurV1A.1115s0040.2.p  71 QYRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDVEARRIRG 120
                             69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.23671128IPR001471AP2/ERF domain
SMARTSM003801.1E-3671134IPR001471AP2/ERF domain
SuperFamilySSF541712.29E-2271130IPR016177DNA-binding domain
CDDcd000181.36E-3371129No hitNo description
Gene3DG3DSA:3.30.730.101.5E-3271130IPR001471AP2/ERF domain
PfamPF008471.5E-1172120IPR001471AP2/ERF domain
PRINTSPR003679.0E-127283IPR001471AP2/ERF domain
PRINTSPR003679.0E-1294110IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MISRLTFKSL RMSLMSMRVM MSLLMSSLLL SLLLLLALLK NVSSLGGSAA VKSAEISGQA  60
EKSAKRKRKN QYRGIRQRPW GKWAAEIRDP RKGVRVWLGT FNTAEEAARA YDVEARRIRG  120
KKAKVNFPDE APLASSKQSI KENSRKSLPK TDSSRTFSYS SNPELDCNNM GLVEEKPLVN  180
QFGSIYSFPA SGDSGMKTLA ESDSTPMCFN SDQGSNSVDC DLEWGEQTPM TPESLTVLAA  240
TSEADESLLA NPEELKSYSG NAVPAEEKSG KSLSEELLAF DDQLKYLQMP DLEGSSWEAS  300
LDNFLNGETT QDGTNAMDLW SFDDFPSMVG GV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A7e-2271128260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
5wx9_A8e-22701361380Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSapurV1A.1115s0040.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006369093.10.0ethylene-responsive transcription factor RAP2-12
TrEMBLB9N7H50.0B9N7H5_POPTR; Uncharacterized protein
STRINGPOPTR_0001s16400.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.31e-51related to AP2 12